KDM5C: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
imported>Smokefoot (Alpha-ketoglutarate-dependent hydroxylases link) |
||
| Line 1: | Line 1: | ||
{{Infobox_gene}} | {{Infobox_gene}} | ||
'''Lysine-specific demethylase 5C''' is an [[enzyme]] that in humans is encoded by the ''KDM5C'' [[gene]].<ref name="pmid7951230">{{cite journal | vauthors = Agulnik AI, Mitchell MJ, Mattei MG, Borsani G, Avner PA, Lerner JL, Bishop CE | title = A novel X gene with a widely transcribed Y-linked homologue escapes X-inactivation in mouse and human | journal = Human Molecular Genetics | volume = 3 | issue = 6 | pages = 879–84 | date = Jun 1994 | pmid = 7951230 | pmc = | doi = 10.1093/hmg/3.6.879 }}</ref><ref name="pmid8162017">{{cite journal | vauthors = Wu J, Ellison J, Salido E, Yen P, Mohandas T, Shapiro LJ | title = Isolation and characterization of XE169, a novel human gene that escapes X-inactivation | journal = Human Molecular Genetics | volume = 3 | issue = 1 | pages = 153–60 | date = Jan 1994 | pmid = 8162017 | pmc = | doi = 10.1093/hmg/3.1.153 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: JARID1C jumonji, AT rich interactive domain 1C| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8242| accessdate = }}</ref> KDM5C belongs to the [[ | '''Lysine-specific demethylase 5C''' is an [[enzyme]] that in humans is encoded by the ''KDM5C'' [[gene]].<ref name="pmid7951230">{{cite journal | vauthors = Agulnik AI, Mitchell MJ, Mattei MG, Borsani G, Avner PA, Lerner JL, Bishop CE | title = A novel X gene with a widely transcribed Y-linked homologue escapes X-inactivation in mouse and human | journal = Human Molecular Genetics | volume = 3 | issue = 6 | pages = 879–84 | date = Jun 1994 | pmid = 7951230 | pmc = | doi = 10.1093/hmg/3.6.879 }}</ref><ref name="pmid8162017">{{cite journal | vauthors = Wu J, Ellison J, Salido E, Yen P, Mohandas T, Shapiro LJ | title = Isolation and characterization of XE169, a novel human gene that escapes X-inactivation | journal = Human Molecular Genetics | volume = 3 | issue = 1 | pages = 153–60 | date = Jan 1994 | pmid = 8162017 | pmc = | doi = 10.1093/hmg/3.1.153 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: JARID1C jumonji, AT rich interactive domain 1C| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8242| accessdate = }}</ref> KDM5C belongs to the [[alpha-ketoglutarate-dependent hydroxylase]] superfamily. | ||
== Function == | == Function == | ||
| Line 31: | Line 31: | ||
{{Enzymes}} | {{Enzymes}} | ||
{{Portal bar|Molecular and Cellular Biology|border=no}} | {{Portal bar|Molecular and Cellular Biology|border=no}} | ||
[[Category:Transcription factors]] | [[Category:Transcription factors]] | ||
| Line 39: | Line 36: | ||
[[Category:Human 2OG oxygenases]] | [[Category:Human 2OG oxygenases]] | ||
[[Category:EC 1.14.11]] | [[Category:EC 1.14.11]] | ||
{{gene-X-stub}} | |||
Latest revision as of 19:26, 6 February 2018
| VALUE_ERROR (nil) | |||||||
|---|---|---|---|---|---|---|---|
| Identifiers | |||||||
| Aliases | |||||||
| External IDs | GeneCards: [1] | ||||||
| Orthologs | |||||||
| Species | Human | Mouse | |||||
| Entrez |
|
| |||||
| Ensembl |
|
| |||||
| UniProt |
|
| |||||
| RefSeq (mRNA) |
|
| |||||
| RefSeq (protein) |
|
| |||||
| Location (UCSC) | n/a | n/a | |||||
| PubMed search | n/a | n/a | |||||
| Wikidata | |||||||
| |||||||
Lysine-specific demethylase 5C is an enzyme that in humans is encoded by the KDM5C gene.[1][2][3] KDM5C belongs to the alpha-ketoglutarate-dependent hydroxylase superfamily.
Function
This gene is a member of the SMCY homolog family and encodes a protein with one ARID domain, one JmjC domain, one JmjN domain and two PHD-type zinc fingers. The DNA-binding motifs suggest this protein is involved in the regulation of transcription and chromatin remodeling. Mutations in this gene have been associated with X-linked mental retardation. Alternatively spliced variants that encode different protein isoforms have been described but the full-length nature of only one has been determined.[3]
References
- ↑ Agulnik AI, Mitchell MJ, Mattei MG, Borsani G, Avner PA, Lerner JL, Bishop CE (Jun 1994). "A novel X gene with a widely transcribed Y-linked homologue escapes X-inactivation in mouse and human". Human Molecular Genetics. 3 (6): 879–84. doi:10.1093/hmg/3.6.879. PMID 7951230.
- ↑ Wu J, Ellison J, Salido E, Yen P, Mohandas T, Shapiro LJ (Jan 1994). "Isolation and characterization of XE169, a novel human gene that escapes X-inactivation". Human Molecular Genetics. 3 (1): 153–60. doi:10.1093/hmg/3.1.153. PMID 8162017.
- ↑ 3.0 3.1 "Entrez Gene: JARID1C jumonji, AT rich interactive domain 1C".
Further reading
- Agate RJ, Choe M, Arnold AP (Feb 2004). "Sex differences in structure and expression of the sex chromosome genes CHD1Z and CHD1W in zebra finches". Molecular Biology and Evolution. 21 (2): 384–96. doi:10.1093/molbev/msh027. PMID 14660691.
- Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villén J, Li J, Cohn MA, Cantley LC, Gygi SP (Aug 2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proceedings of the National Academy of Sciences of the United States of America. 101 (33): 12130–5. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
- Jensen LR, Amende M, Gurok U, Moser B, Gimmel V, Tzschach A, Janecke AR, Tariverdian G, Chelly J, Fryns JP, Van Esch H, Kleefstra T, Hamel B, Moraine C, Gecz J, Turner G, Reinhardt R, Kalscheuer VM, Ropers HH, Lenzner S (Feb 2005). "Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation". American Journal of Human Genetics. 76 (2): 227–36. doi:10.1086/427563. PMC 1196368. PMID 15586325.
- Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, Yamashita R, Yamamoto J, Sekine M, Tsuritani K, Wakaguri H, Ishii S, Sugiyama T, Saito K, Isono Y, Irie R, Kushida N, Yoneyama T, Otsuka R, Kanda K, Yokoi T, Kondo H, Wagatsuma M, Murakawa K, Ishida S, Ishibashi T, Takahashi-Fujii A, Tanase T, Nagai K, Kikuchi H, Nakai K, Isogai T, Sugano S (Jan 2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Research. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
- Santos C, Rodriguez-Revenga L, Madrigal I, Badenas C, Pineda M, Milà M (May 2006). "A novel mutation in JARID1C gene associated with mental retardation". European Journal of Human Genetics. 14 (5): 583–6. doi:10.1038/sj.ejhg.5201608. PMID 16538222.
- Tzschach A, Lenzner S, Moser B, Reinhardt R, Chelly J, Fryns JP, Kleefstra T, Raynaud M, Turner G, Ropers HH, Kuss A, Jensen LR (Apr 2006). "Novel JARID1C/SMCX mutations in patients with X-linked mental retardation". Human Mutation. 27 (4): 389. doi:10.1002/humu.9420. PMID 16541399.
- Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP (Oct 2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nature Biotechnology. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID 16964243.
- Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (Nov 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983.
- Iwase S, Lan F, Bayliss P, de la Torre-Ubieta L, Huarte M, Qi HH, Whetstine JR, Bonni A, Roberts TM, Shi Y (Mar 2007). "The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases". Cell. 128 (6): 1077–88. doi:10.1016/j.cell.2007.02.017. PMID 17320160.
- Tahiliani M, Mei P, Fang R, Leonor T, Rutenberg M, Shimizu F, Li J, Rao A, Shi Y (May 2007). "The histone H3K4 demethylase SMCX links REST target genes to X-linked mental retardation". Nature. 447 (7144): 601–5. doi:10.1038/nature05823. PMID 17468742.
External links
- JARID1C+protein,+human at the US National Library of Medicine Medical Subject Headings (MeSH)
This article incorporates text from the United States National Library of Medicine, which is in the public domain.
 | This article on a gene on the human X chromosome and/or its associated protein is a stub. You can help Wikipedia by expanding it. |