Zap1p gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The upstream activating sequence (UAS) for Zap1p is 5'-ACC(C/T)(C/T)(A/C/G/T)AAGGT-3' in the promoters of ZRT1 and ZRT2 regarding this zinc-regulated transcription factor [67].^[1]

ZAP samplings

Copying the apparent consensus sequence for Zap1p (ACCCTCA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs (starting with SuccessablesZAP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are looking for, and found:

negative strand, negative direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
positive strand, negative direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
positive strand, positive direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
negative strand, positive direction, looking for ACC(C/T)(C/T)NAAGGT, 0.
complement, negative strand, negative direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
complement, positive strand, negative direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
complement, positive strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
complement, negative strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
inverse complement, negative strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
inverse complement, positive strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
inverse complement, positive strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
inverse complement, negative strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
inverse negative strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
inverse positive strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
inverse positive strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
inverse negative strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0.

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

External links

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transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions 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transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions

@@ Line 20: / Line 20: @@
 |accessdate=18 September 2020 }}</ref>
-==Samplings==
+==ZAP samplings==
 Copying the apparent consensus sequence for Zap1p (ACCCTCA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.
@@ Line 34: / Line 34: @@
 # complement, negative strand, positive direction, looking for TGG(A/G)(A/G)NTTCCA, 0.
 # inverse complement, negative strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
-# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, negative direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
-# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, positive strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
-# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
+# inverse complement, negative strand, positive direction, looking for ACCTTN(A/G)(A/G)GGT, 0.
 # inverse negative strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
-# inverse positive strand, negative direction, looking for AAAAAAAA, 0.
+# inverse positive strand, negative direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
-# inverse positive strand, positive direction, looking for AAAAAAAA, 0.
+# inverse positive strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
-# inverse negative strand, positive direction, looking for AAAAAAAA, 0.
+# inverse negative strand, positive direction, looking for TGGAAN(C/T)(C/T)CCA, 0.
-===AAA UTRs===
-{{main|UTR promoter gene transcriptions}}
-===AAA core promoters===
-{{main|Core promoter gene transcriptions}}
-===AAA proximal promoters===
-{{main|Proximal promoter gene transcriptions}}
-===AAA distal promoters===
-{{main|Distal promoter gene transcriptions}}
 ==See also==

Zap1p gene transcriptions: Difference between revisions

Revision as of 15:52, 15 March 2021

Contents

Human genes

Consensus sequences

ZAP samplings

See also

References

External links

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