Shoot specific element gene transcriptions

Jump to navigation Jump to search

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

Shoot specific elements (GATAatGATG).[1]

SHOOT samplings

Copying the apparent consensus sequence for Shoot (GATAATGATG) and putting it in "⌘F" finds none located between ZSCAN22 and A1BG or between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence GATAATGATG (starting with SuccessablesSHOOT.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand, negative direction, looking for GATAATGATG, 0.
  2. positive strand, negative direction, looking for GATAATGATG, 0.
  3. positive strand, positive direction, looking for GATAATGATG, 0.
  4. negative strand, positive direction, looking for GATAATGATG, 0.
  5. complement, negative strand, negative direction, looking for CTATTACTAC, 0.
  6. complement, positive strand, negative direction, looking for CTATTACTAC, 0.
  7. complement, positive strand, positive direction, looking for CTATTACTAC, 0.
  8. complement, negative strand, positive direction, looking for CTATTACTAC, 0.
  9. inverse complement, negative strand, negative direction, looking for CATCATTATC, 0.
  10. inverse complement, positive strand, negative direction, looking for CATCATTATC, 0.
  11. inverse complement, positive strand, positive direction, looking for CATCATTATC, 0.
  12. inverse complement, negative strand, positive direction, looking for CATCATTATC, 0.
  13. inverse negative strand, negative direction, looking for GTAGTAATAG, 0.
  14. inverse positive strand, negative direction, looking for GTAGTAATAG, 0.
  15. inverse positive strand, positive direction, looking for GTAGTAATAG, 0.
  16. inverse negative strand, positive direction, looking for GTAGTAATAG, 0.

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

See also

References

  1. Bhaskar Sharma & Joemar Taganna (12 June 2020). "Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato". Scientific Reports. 10 (9581). doi:10.1038/s41598-020-66553-1. PMID 32533036 Check |pmid= value (help). Retrieved 27 August 2020.

External links