Tapetum box gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The consensus sequence for the TAPETUM box is TCGTGT.^[1]

Tapetum box Samplings

Copying the consensus Tapetum box: TCGTGT and putting the sequence in "⌘F" finds one location between ZNF497 and A1BG and one between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence TCGTGT (starting with SuccessablesTAP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for TCGTGT, 1, TCGTGT at 3915.
positive strand, negative direction, looking for TCGTGT, 0.
positive strand, positive direction, looking for TCGTGT, 1, TCGTGT at 3740.
negative strand, positive direction, looking for TCGTGT, 1, TCGTGT at 80.
complement, negative strand, negative direction, looking for AGCACA, 0.
complement, positive strand, negative direction, looking for AGCACA, 1, AGCACA at 3915.
complement, positive strand, positive direction, looking for AGCACA, 1, AGCACA at 80.
complement, negative strand, positive direction, looking for AGCACA, 1, AGCACA at 3740.
inverse complement, negative strand, negative direction, looking for ACACGA, 1, ACACGA at 4402.
inverse complement, positive strand, negative direction, looking for ACACGA, 1, ACACGA at 4471.
inverse complement, positive strand, positive direction, looking for ACACGA, 0.
inverse complement, negative strand, positive direction, looking for ACACGA, 0.
inverse negative strand, negative direction, looking for TGTGCT, 1, TGTGCT at 4471.
inverse positive strand, negative direction, looking for TGTGCT, 1, TGTGCT at 4402.
inverse positive strand, positive direction, looking for TGTGCT, 0.
inverse negative strand, positive direction, looking for TGTGCT, 0.

TAP UTRs

Negative strand, negative direction: ACACGA at 4402, TCGTGT at 3915.

Positive strand, negative direction: ACACGA at 4471.

TAP distal promoters

Negative strand, positive direction: TCGTGT at 80.

Positive strand, positive direction: TCGTGT at 3740.

References

↑ Zi-Wei Ye, Jie Xu, Jianxin Shi, Dabing Zhang and Mee-Len Chye (January 2017). "Kelch-motif containing acyl-CoA binding proteins AtACBP4 and AtACBP5 are differentially expressed and function in floral lipid metabolism" (PDF). Plant Molecular Biology. 93: 209–225. doi:10.1007/s11103-016-0557-5. PMID 27826761. Retrieved 7 May 2020.

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transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box gene transcriptions TAT box gene transcriptions TATC box gene transcriptions Tbf1 regulatory factor gene transcriptions T box gene transcriptions TCCACCATA element gene transcriptions TC element gene transcriptions TCT gene transcriptions TEA consensus sequence gene transcriptions Tec1p gene transcriptions Telomeric repeat DNA-binding factor gene transcriptions Tetradecanoylphorbol-13-acetate response element gene transcriptions TGF-β control elements (TCEs) TGF-β inhibitory elements (TIEs) Thyroid hormone response element gene transcriptions Transcriptional regulation Transcription bubble gene transcriptions Transcription factor gene transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions