TAGteam gene transcriptions: Difference between revisions
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The "heptamer consensus sequence [is] CAGGTAG".<ref name=Fonseca/> | The "heptamer consensus sequence [is] CAGGTAG".<ref name=Fonseca/> | ||
== | ==TAGteam samplings== | ||
{{main|Model samplings}} | |||
Copying the consensus TAGteam: CAGGTAG and putting the sequence in "⌘F" finds one location between ZNF497 and A1BG or no locations between ZSCAN22 and A1BG as can be found by the computer programs. | |||
For the Basic programs testing consensus sequence CAGGTAG (starting with SuccessablesTAG.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found: | |||
# negative strand, negative direction, looking for CAGGTAG, 0. | |||
# positive strand, negative direction, looking for AAAAAAAA, 0. | |||
# positive strand, positive direction, looking for AAAAAAAA, 0. | |||
# negative strand, positive direction, looking for AAAAAAAA, 0. | |||
# complement, negative strand, negative direction, looking for GTCCATC, 0. | |||
# complement, positive strand, negative direction, looking for TTTTTTTT, 0. | |||
# complement, positive strand, positive direction, looking for TTTTTTTT, 0. | |||
# complement, negative strand, positive direction, looking for TTTTTTTT, 0. | |||
# inverse complement, negative strand, negative direction, looking for CTACCTG, 0. | |||
# inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0. | |||
# inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0. | |||
# inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0. | |||
# inverse negative strand, negative direction, looking for GATGGAC, 0. | |||
# inverse positive strand, negative direction, looking for AAAAAAAA, 0. | |||
# inverse positive strand, positive direction, looking for AAAAAAAA, 0. | |||
# inverse negative strand, positive direction, looking for AAAAAAAA, 0. | |||
===TAG UTRs=== | |||
{{main|UTR promoter gene transcriptions}} | |||
===TAG core promoters=== | |||
{{main|Core promoter gene transcriptions}} | |||
===TAG proximal promoters=== | |||
{{main|Proximal promoter gene transcriptions}} | |||
===TAG distal promoters=== | |||
{{main|Distal promoter gene transcriptions}} | |||
==See also== | ==See also== |
Revision as of 18:13, 2 March 2021
Associate Editor(s)-in-Chief: Henry A. Hoff
The "heptamer consensus sequence CAGGTAG (i.e., the TAGteam) is overrepresented in regulatory regions of the earliest expressed zygotic genes [2]."[1]
Human genes
Consensus sequences
The "heptamer consensus sequence [is] CAGGTAG".[1]
TAGteam samplings
Copying the consensus TAGteam: CAGGTAG and putting the sequence in "⌘F" finds one location between ZNF497 and A1BG or no locations between ZSCAN22 and A1BG as can be found by the computer programs.
For the Basic programs testing consensus sequence CAGGTAG (starting with SuccessablesTAG.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
- negative strand, negative direction, looking for CAGGTAG, 0.
- positive strand, negative direction, looking for AAAAAAAA, 0.
- positive strand, positive direction, looking for AAAAAAAA, 0.
- negative strand, positive direction, looking for AAAAAAAA, 0.
- complement, negative strand, negative direction, looking for GTCCATC, 0.
- complement, positive strand, negative direction, looking for TTTTTTTT, 0.
- complement, positive strand, positive direction, looking for TTTTTTTT, 0.
- complement, negative strand, positive direction, looking for TTTTTTTT, 0.
- inverse complement, negative strand, negative direction, looking for CTACCTG, 0.
- inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
- inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
- inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
- inverse negative strand, negative direction, looking for GATGGAC, 0.
- inverse positive strand, negative direction, looking for AAAAAAAA, 0.
- inverse positive strand, positive direction, looking for AAAAAAAA, 0.
- inverse negative strand, positive direction, looking for AAAAAAAA, 0.
TAG UTRs
TAG core promoters
TAG proximal promoters
TAG distal promoters
See also
References
- ↑ 1.0 1.1 Rodrigo Nunes da Fonseca and Thiago M. Venancio (1 March 2018). "Maternal or zygotic: Unveiling the secrets of the Pancrustacea transcription factor zelda". Plos Genetics. 14 (3): e1007201. doi:10.1371/journal.pgen.1007201. PMID 29494591. Retrieved 5 September 2020.