Smp1p gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The upstream activating sequence (UAS) for Smp1p is 5'-ACTACTA(T/A)₄TAG-3' in the promoters of STL1 and CWP1 regarding osmotic stress response [68].^[1]

Samplings

Copying the apparent consensus sequence for SMP (ACTACTA) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence ACTACTA(T/A)(T/A)(T/A)(T/A)TAG (starting with SuccessablesSMP.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
positive strand, negative direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
positive strand, positive direction, looking for ACTACTA(T/A)(T/A)(T/A)(T/A)TAG, 0.
negative strand, positive direction, looking for AAAAAAAA, 0.
complement, negative strand, negative direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, negative direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, positive direction, looking for TTTTTTTT, 0.
complement, negative strand, positive direction, looking for TGATGAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse complement, negative strand, negative direction, looking for TTTTTTTT, 0.
inverse complement, positive strand, negative direction, looking for TTTTTTTT, 0.
inverse complement, positive strand, positive direction, looking for TTTTTTTT, 0.
inverse complement, negative strand, positive direction, looking for TTTTTTTT, 0.
inverse negative strand, negative direction, looking for AAAAAAAA, 0.
inverse positive strand, negative direction, looking for AAAAAAAA, 0.
inverse positive strand, positive direction, looking for AAAAAAAA, 0.
inverse negative strand, positive direction, looking for AAAAAAAA, 0.

SMP UTRs

SMP core promoters

SMP proximal promoters

SMP distal promoters

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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