Rlm1p gene transcriptions: Difference between revisions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The upstream activating sequence (UAS) for Rlm1p is 5'-CTA(T/A)(T/A)(T/A)(T/A)TAG-3' regarding maintenance of cell integrity [69].^[1]

RLM samplings

Copying the apparent consensus sequence for Rlm1p (CTATATATAG) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence CTA(A/T)(A/T)(A/T)(A/T)TAG (starting with SuccessablesRLM.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
complement, negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
complement, negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse complement, negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse complement, positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse complement, positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse complement, negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
inverse negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
inverse negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

External links

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transcriptions MYB recognition element gene transcriptions Myelocytomatosis transcription factor gene transcriptions Myocyte enhancer factor gene transcriptions N-boxes Ndt80p gene transcriptions Nuclear factor 1 Nuclear factor 𝜿B Nuclear factor gene transcriptions Nuclear factor of activated T cell gene transcriptions (NFAT) Nuclear factor Y gene transcriptions Nutrient-sensing response element gene transcriptions Oaf1p gene transcriptions ORE1 binding site gene transcriptions p53 response element gene transcriptions P63 DNA-binding site gene transcriptions P box gene transcriptions Pdr1,3p gene transcriptions Peroxisome proliferator hormone response element gene transcriptions Phosphate starvation-response transcription factor gene transcriptions Pollen1 element gene transcriptions Polycomb response element gene transcriptions Preinitiation complex Preinitiation complex gene transcriptions Pribnow box gene transcriptions Prolamin box gene transcriptions Promoter gene transcriptions 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transcriptions Ste12p gene transcriptions Sterol response element gene transcriptions Sucrose box gene transcriptions Synaptic Activity-Responsive Elements TACTAAC box gene transcriptions TAGteam gene transcriptions Tapetum box gene transcriptions TATA binding protein associated factor gene transcriptions TATA binding protein gene transcriptions TATA box gene transcriptions TAT box gene transcriptions TATC box gene transcriptions Tbf1 regulatory factor gene transcriptions T box gene transcriptions TCCACCATA element gene transcriptions TC element gene transcriptions TCT gene transcriptions TEA consensus sequence gene transcriptions Tec1p gene transcriptions Telomeric repeat DNA-binding factor gene transcriptions Tetradecanoylphorbol-13-acetate response element gene transcriptions TGF-β control elements (TCEs) TGF-β inhibitory elements (TIEs) Thyroid hormone response element gene transcriptions Transcriptional regulation Transcription bubble gene transcriptions Transcription factor gene transcriptions Transcription factor 3 gene transcriptions Transcription factory gene transcriptions Transcription start site gene transcriptions Translational control sequence gene transcriptions U box gene transcriptions Unfolded protein response element gene transcriptions Upstream response element gene transcriptions Upstream stimulatory factor gene transcriptions UTR promoter gene transcriptions V and P box gene transcriptions V box gene transcriptions Vhr1p gene transcriptions Vitamin D response element gene transcriptions W box gene transcriptions X box gene transcriptions Xbp1p gene transcriptions X core promoter element gene transcriptions Xenobiotic response element gene transcriptions Xenobiotic responsive element gene transcriptions Yap1p,2p gene transcriptions Y box gene transcriptions YY1 gene transcriptions Zap1p gene transcriptions Z box gene transcriptions Zinc responsive element gene transcriptions

@@ Line 20: / Line 20: @@
 |accessdate=18 September 2020 }}</ref>
-==Samplings==
+==RLM samplings==
 Copying the apparent consensus sequence for Rlm1p (CTATATATAG) and putting it in "⌘F" finds none located between ZSCAN22 and none between ZNF497 and A1BG as can be found by the computer programs.
-For the Basic programs (starting with SuccessablesRlm1p.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are looking for, and found:
+For the Basic programs testing consensus sequence CTA(A/T)(A/T)(A/T)(A/T)TAG (starting with SuccessablesRLM.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:
-# negative strand in the negative direction is SuccessablesRlm1p--.bas, looking for 3'-C-T-A-(T/A)-(T/A)-(T/A)-(T/A)-T-A-G-5', 0.
+# negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# complement, negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# complement, negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse complement, negative strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse complement, positive strand, negative direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse complement, positive strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse complement, negative strand, positive direction, looking for CTA(A/T)(A/T)(A/T)(A/T)TAG, 0.
+# inverse negative strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse positive strand, negative direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse positive strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
+# inverse negative strand, positive direction, looking for GAT(A/T)(A/T)(A/T)(A/T)ATC, 0.
 ==See also==

Rlm1p gene transcriptions: Difference between revisions

Latest revision as of 05:55, 22 February 2021

Contents

Human genes

Consensus sequences

RLM samplings

See also

References

External links

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