Gcr1p gene transcriptions

Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Consensus sequences

The upstream activating sequence (UAS) for Gcr1p is 5'-CTTCC-3' for the transcriptional activator involved in the regulation of glycolysis [77].^[1]

Samplings

Copying the apparent consensus sequence for Gcr1p 5'-CTTCC-3' and putting it in "⌘F" finds four located between ZSCAN22 and six between ZNF497 and A1BG as can be found by the computer programs.

For the Basic programs (starting with SuccessablesE.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are looking for, and found:

negative strand, negative direction, looking for CTTCC, 4, CTTCC at 3611, CTTCC at 2558, CTTCC at 1656, CTTCC at 1556, and complements.
negative strand, positive direction, looking for CTTCC, 6, CTTCC at 4242, CTTCC at 1433, CTTCC at 1333, CTTCC at 1070, CTTCC at 734, CTTCC at 677, and complements.
positive strand, negative direction, looking for CTTCC, 1, CTTCC at 3777, and complement.
positive strand, positive direction, looking for CTTCC, 3, CTTCC at 4249, CTTCC at 3852, CTTCC at 210, and complements.
complement, negative strand, negative direction, looking for GAAGG, 1, GAAGG at 3777.
complement, negative strand, positive direction, looking for GAAGG, 3, GAAGG at 4249, GAAGG at 3852, GAAGG at 210.
complement, positive strand, negative direction, looking for GAAGG, 4, GAAGG at 3611, GAAGG at 2558, GAAGG at 1656, GAAGG at 1556.
complement, positive strand, positive direction, looking for GAAGG, 6, GAAGG at 4242, GAAGG at 1433, GAAGG at 1333, GAAGG at 1070, GAAGG at 734, GAAGG at 677.
inverse complement, negative strand, negative direction, looking for GGAAG, 1, GGAAG at 619, and complement.
inverse complement, negative strand, positive direction, looking for GGAAG, 9, GGAAG at 4263, GGAAG at 4248, GGAAG at 3871, GGAAG at 3762, GGAAG at 3667, GGAAG at 2784, GGAAG at 2748, GGAAG at 1594, GGAAG at 209, and complements.
inverse complement, positive strand, negative direction, looking for GGAAG, 7, GGAAG at 3909, GGAAG at 3610, GGAAG at 2730, GGAAG at 2557, GGAAG at 331, GGAAG at 241, GGAAG at 81, and complements.
inverse complement, positive strand, positive direction, looking for GGAAG, 20, GGAAG at 4241, GGAAG at 4061, GGAAG at 3312, GGAAG at 2582, GGAAG at 1516, GGAAG at 1432, GGAAG at 1405, GGAAG at 1332, GGAAG at 1305, GGAAG at 1264, GGAAG at 1153, GGAAG at 1069, GGAAG at 1012, GGAAG at 928, GGAAG at 828, GGAAG at 760, GGAAG at 733, GGAAG at 676, GGAAG at 592, GGAAG at 456, and complements.
inverse negative strand, negative direction, looking for CCTTC, 7, CCTTC at 3909, CCTTC at 3610, CCTTC at 2730, CCTTC at 2557, CCTTC at 331, CCTTC at 241, CCTTC at 81.
inverse negative strand, positive direction, looking for CCTTC, 9, CCTTC at 4263, CCTTC at 4248, CCTTC at 3871, CCTTC at 3762, CCTTC at 3667, CCTTC at 2784, CCTTC at 2748, CCTTC at 1594, CCTTC at 209.
inverse positive strand, negative direction, looking for CCTTC, 1, CCTTC at 619.
inverse positive strand, positive direction, looking for CCTTC, 20, CCTTC at 4241, CCTTC at 4061, CCTTC at 3312, CCTTC at 2582, CCTTC at 1516, CCTTC at 1432, CCTTC at 1405, CCTTC at 1332, CCTTC at 1305, CCTTC at 1264, CCTTC at 1153, CCTTC at 1069, CCTTC at 1012, CCTTC at 928, CCTTC at 828, CCTTC at 760, CCTTC at 733, CCTTC at 676, CCTTC at 592, CCTTC at 456.

Gcr core promoters

Gcr proximal promoters

Negative strand, positive direction: CTTCC at 4242, and complement.

Gcr distal promoters

Negative strand, negative direction: CTTCC at 3611, CTTCC at 2558, CTTCC at 1656, CTTCC at 1556, and complements.

Negative strand, positive direction: CTTCC at 1433, CTTCC at 1333, CTTCC at 1070, CTTCC at 734, CTTCC at 677, and complements.

References

↑ Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

External links

[Tang-1] Hongting Tang, Yanling Wu, Jiliang Deng, Nanzhu Chen, Zhaohui Zheng, Yongjun Wei, Xiaozhou Luo, and Jay D. Keasling (6 August 2020). "Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae". Metabolites. 10 (8): 320–39. doi:10.3390/metabo10080320. PMID 32781665 Check |pmid= value (help). Retrieved 18 September 2020.

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