SCN3B: Difference between revisions

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{{Infobox_gene}}
{{PBB_Controls
'''Sodium channel subunit beta-3''' is a [[protein]] that in humans is encoded by the ''SCN3B'' [[gene]].<ref name="pmid10688874">{{cite journal | vauthors = Morgan K, Stevens EB, Shah B, Cox PJ, Dixon AK, Lee K, Pinnock RD, Hughes J, Richardson PJ, Mizuguchi K, Jackson AP | title = β3: An additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics | journal = Proc Natl Acad Sci U S A | volume = 97 | issue = 5 | pages = 2308–13 |date=Apr 2000 | pmid = 10688874 | pmc = 15797 | doi = 10.1073/pnas.030362197 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: SCN3B sodium channel, voltage-gated, type III, beta| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=55800| accessdate = }}</ref> Two alternatively spliced variants, encoding the same protein, have been identified.
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| require_manual_inspection = no
| update_protein_box = yes
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<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
== Function ==
{{GNF_Protein_box
| image =
| image_source =
| PDB =
| Name = Sodium channel, voltage-gated, type III, beta
| HGNCid = 20665
| Symbol = SCN3B
| AltSymbols =; HSA243396; SCNB3
| OMIM = 608214
| ECnumber = 
| Homologene = 10176
| MGIid = 1918882
| GeneAtlas_image1 = PBB_GE_SCN3B_204723_at_tn.png
| GeneAtlas_image2 = PBB_GE_SCN3B_204722_at_tn.png
| Function = {{GNF_GO|id=GO:0005248 |text = voltage-gated sodium channel activity}} {{GNF_GO|id=GO:0031402 |text = sodium ion binding}}
| Component = {{GNF_GO|id=GO:0005886 |text = plasma membrane}} {{GNF_GO|id=GO:0016021 |text = integral to membrane}}
| Process = {{GNF_GO|id=GO:0006811 |text = ion transport}} {{GNF_GO|id=GO:0006814 |text = sodium ion transport}}
| Orthologs = {{GNF_Ortholog_box
    | Hs_EntrezGene = 55800
    | Hs_Ensembl = ENSG00000166257
    | Hs_RefseqProtein = NP_001035241
    | Hs_RefseqmRNA = NM_001040151
    | Hs_GenLoc_db = 
    | Hs_GenLoc_chr = 11
    | Hs_GenLoc_start = 123005107
    | Hs_GenLoc_end = 123030165
    | Hs_Uniprot = Q9NY72
    | Mm_EntrezGene = 235281
    | Mm_Ensembl = ENSMUSG00000049281
    | Mm_RefseqmRNA = NM_153522
    | Mm_RefseqProtein = NP_705742
    | Mm_GenLoc_db = 
    | Mm_GenLoc_chr = 9
    | Mm_GenLoc_start = 40019788
    | Mm_GenLoc_end = 40042188
    | Mm_Uniprot = Q0P666
  }}
}}
'''Sodium channel, voltage-gated, type III, beta''', also known as '''SCN3B''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: SCN3B sodium channel, voltage-gated, type III, beta| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=55800| accessdate = }}</ref>


<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
Voltage-gated sodium channels are transmembrane [[glycoprotein]] complexes composed of a large alpha subunit and one or more regulatory beta subunits. They are responsible for the generation and propagation of [[action potential]]s in neurons and muscle. This gene encodes one member of the sodium channel beta subunit gene family, and influences the inactivation kinetics of the sodium channel.<ref name="entrez" />
{{PBB_Summary
 
| section_title =
== Clinical significance ==
| summary_text = Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel beta subunit gene family, and influences the inactivation kinetics of the sodium channel. Two alternatively spliced variants, encoding the same protein, have been identified.<ref name="entrez">{{cite web | title = Entrez Gene: SCN3B sodium channel, voltage-gated, type III, beta| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=55800| accessdate = }}</ref>
 
}}
Mutations in the gene are associated with abnormal cardiac electrophysiology.<ref name="pmid19351516">{{cite journal | vauthors = Hakim P, Gurung IS, Pedersen TH, Thresher R, Brice N, Lawrence J, Grace AA, Huang CL | title = Scn3b knockout mice exhibit abnormal ventricular electrophysiological properties | journal = Prog. Biophys. Mol. Biol. | volume = 98 | issue = 2-3 | pages = 251–66 | year = 2008 | pmid = 19351516 | pmc = 2764399 | doi = 10.1016/j.pbiomolbio.2009.01.005  }}</ref><ref name="pmid19796257">{{cite journal | vauthors = Hakim P, Brice N, Thresher R, Lawrence J, Zhang Y, Jackson AP, Grace AA, Huang CL | title = Scn3b knockout mice exhibit abnormal sino-atrial and cardiac conduction properties | journal = Acta Physiol (Oxf) | volume = 198 | issue = 1 | pages = 47–59 |date=January 2010 | pmid = 19796257 | doi = 10.1111/j.1748-1716.2009.02048.x | pmc = 3763209 }}</ref>


==See also==
==See also==
Line 59: Line 14:


==References==
==References==
{{reflist}}
{{Clear}}


{{reflist|2}}
==Further reading==
==Further reading==
{{refbegin | 2}}
{{refbegin | 2}}
{{PBB_Further_reading
*{{cite journal   |vauthors=Hirosawa M, Nagase T, Ishikawa K, etal |title=Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain |journal=DNA Res. |volume=6 |issue= 5 |pages= 329–36 |year= 2000 |pmid= 10574461 |doi=10.1093/dnares/6.5.329  }}
| citations =
*{{cite journal  | vauthors=Hartley JL, Temple GF, Brasch MA |title=DNA Cloning Using In Vitro Site-Specific Recombination |journal=Genome Res. |volume=10 |issue= 11 |pages= 1788–95 |year= 2001 |pmid= 11076863 |doi=10.1101/gr.143000  | pmc=310948 }}
*{{cite journal | author=Hirosawa M, Nagase T, Ishikawa K, ''et al.'' |title=Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. |journal=DNA Res. |volume=6 |issue= 5 |pages= 329-36 |year= 2000 |pmid= 10574461 |doi= }}
*{{cite journal   |vauthors=Stevens EB, Cox PJ, Shah BS, etal |title=Tissue distribution and functional expression of the human voltage-gated sodium channel beta3 subunit |journal=Pflügers Arch. |volume=441 |issue= 4 |pages= 481–8 |year= 2001 |pmid= 11212211 |doi=10.1007/s004240000449 }}
*{{cite journal  | author=Morgan K, Stevens EB, Shah B, ''et al.'' |title=beta 3: an additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=97 |issue= 5 |pages= 2308-13 |year= 2000 |pmid= 10688874 |doi= 10.1073/pnas.030362197 }}
*{{cite journal   |vauthors=Wiemann S, Weil B, Wellenreuther R, etal |title=Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs |journal=Genome Res. |volume=11 |issue= 3 |pages= 422–35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.GR1547R  | pmc=311072 }}
*{{cite journal  | author=Hartley JL, Temple GF, Brasch MA |title=DNA cloning using in vitro site-specific recombination. |journal=Genome Res. |volume=10 |issue= 11 |pages= 1788-95 |year= 2001 |pmid= 11076863 |doi=  }}
*{{cite journal   |vauthors=Simpson JC, Wellenreuther R, Poustka A, etal |title=Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing |journal=EMBO Rep. |volume=1 |issue= 3 |pages= 287–92 |year= 2001 |pmid= 11256614 |doi= 10.1093/embo-reports/kvd058 | pmc=1083732 }}
*{{cite journal | author=Stevens EB, Cox PJ, Shah BS, ''et al.'' |title=Tissue distribution and functional expression of the human voltage-gated sodium channel beta3 subunit. |journal=Pflugers Arch. |volume=441 |issue= 4 |pages= 481-8 |year= 2001 |pmid= 11212211 |doi=  }}
*{{cite journal  | vauthors=Ratcliffe CF, Westenbroek RE, Curtis R, Catterall WA |title=Sodium channel β1 and β3 subunits associate with neurofascin through their extracellular immunoglobulin-like domain |journal=J. Cell Biol. |volume=154 |issue= 2 |pages= 427–34 |year= 2001 |pmid= 11470829 |doi=10.1083/jcb.200102086  | pmc=2150779 }}
*{{cite journal | author=Wiemann S, Weil B, Wellenreuther R, ''et al.'' |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422-35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.154701 }}
*{{cite journal   |vauthors=Meadows LS, Chen YH, Powell AJ, etal |title=Functional modulation of human brain Nav1.3 sodium channels, expressed in mammalian cells, by auxiliary beta 1, beta 2 and beta 3 subunits |journal=Neuroscience |volume=114 |issue= 3 |pages= 745–53 |year= 2002 |pmid= 12220575 |doi=10.1016/S0306-4522(02)00242-7 }}
*{{cite journal | author=Simpson JC, Wellenreuther R, Poustka A, ''et al.'' |title=Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. |journal=EMBO Rep. |volume=1 |issue= 3 |pages= 287-92 |year= 2001 |pmid= 11256614 |doi= 10.1093/embo-reports/kvd058 }}
*{{cite journal   |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }}
*{{cite journal  | author=Ratcliffe CF, Westenbroek RE, Curtis R, Catterall WA |title=Sodium channel beta1 and beta3 subunits associate with neurofascin through their extracellular immunoglobulin-like domain. |journal=J. Cell Biol. |volume=154 |issue= 2 |pages= 427-34 |year= 2001 |pmid= 11470829 |doi=  }}
*{{cite journal   |vauthors=Ota T, Suzuki Y, Nishikawa T, etal |title=Complete sequencing and characterization of 21,243 full-length human cDNAs |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40–5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal | author=Meadows LS, Chen YH, Powell AJ, ''et al.'' |title=Functional modulation of human brain Nav1.3 sodium channels, expressed in mammalian cells, by auxiliary beta 1, beta 2 and beta 3 subunits. |journal=Neuroscience |volume=114 |issue= 3 |pages= 745-53 |year= 2002 |pmid= 12220575 |doi=  }}
*{{cite journal   |vauthors=Casula MA, Facer P, Powell AJ, etal |title=Expression of the sodium channel beta3 subunit in injured human sensory neurons |journal=NeuroReport |volume=15 |issue= 10 |pages= 1629–32 |year= 2004 |pmid= 15232296 |doi=10.1097/01.wnr.0000134927.02776.ae }}
*{{cite journal | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
*{{cite journal   |vauthors=Adachi K, Toyota M, Sasaki Y, etal |title=Identification of SCN3B as a novel p53-inducible proapoptotic gene |journal=Oncogene |volume=23 |issue= 47 |pages= 7791–8 |year= 2004 |pmid= 15334053 |doi= 10.1038/sj.onc.1208067 }}
*{{cite journal | author=Ota T, Suzuki Y, Nishikawa T, ''et al.'' |title=Complete sequencing and characterization of 21,243 full-length human cDNAs. |journal=Nat. Genet. |volume=36 |issue= 1 |pages= 40-5 |year= 2004 |pmid= 14702039 |doi= 10.1038/ng1285 }}
*{{cite journal   |vauthors=Suzuki Y, Yamashita R, Shirota M, etal |title=Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711–8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604 | pmc=515316 }}
*{{cite journal | author=Casula MA, Facer P, Powell AJ, ''et al.'' |title=Expression of the sodium channel beta3 subunit in injured human sensory neurons. |journal=Neuroreport |volume=15 |issue= 10 |pages= 1629-32 |year= 2004 |pmid= 15232296 |doi=  }}
*{{cite journal   |vauthors=Gerhard DS, Wagner L, Feingold EA, etal |title=The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC) |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121–7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 | pmc=528928 }}
*{{cite journal | author=Adachi K, Toyota M, Sasaki Y, ''et al.'' |title=Identification of SCN3B as a novel p53-inducible proapoptotic gene. |journal=Oncogene |volume=23 |issue= 47 |pages= 7791-8 |year= 2004 |pmid= 15334053 |doi= 10.1038/sj.onc.1208067 }}
*{{cite journal   |vauthors=Wiemann S, Arlt D, Huber W, etal |title=From ORFeome to Biology: A Functional Genomics Pipeline |journal=Genome Res. |volume=14 |issue= 10B |pages= 2136–44 |year= 2004 |pmid= 15489336 |doi= 10.1101/gr.2576704 | pmc=528930 }}
*{{cite journal | author=Suzuki Y, Yamashita R, Shirota M, ''et al.'' |title=Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. |journal=Genome Res. |volume=14 |issue= 9 |pages= 1711-8 |year= 2004 |pmid= 15342556 |doi= 10.1101/gr.2435604 }}
*{{cite journal   |vauthors=Kimura K, Wakamatsu A, Suzuki Y, etal |title=Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes |journal=Genome Res. |volume=16 |issue= 1 |pages= 55–65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406 | pmc=1356129 }}
*{{cite journal | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
*{{cite journal   |vauthors=Mehrle A, Rosenfelder H, Schupp I, etal |title=The LIFEdb database in 2006 |journal=Nucleic Acids Res. |volume=34 |issue= Database issue |pages= D415–8 |year= 2006 |pmid= 16381901 |doi= 10.1093/nar/gkj139 | pmc=1347501 }}
*{{cite journal | author=Wiemann S, Arlt D, Huber W, ''et al.'' |title=From ORFeome to biology: a functional genomics pipeline. |journal=Genome Res. |volume=14 |issue= 10B |pages= 2136-44 |year= 2004 |pmid= 15489336 |doi= 10.1101/gr.2576704 }}
*{{cite journal  |vauthors=Hakim P, Gurung IS, Pedersen TH, etal |title=Scn3b knockout mice exhibit abnormal ventricular electrophysiological properties |journal=Prog Biophys Mol Biol. |volume=98 |issue= 2–3 |pages= 251–66 |year= 2008 |pmid= 19351516 |doi= 10.1016/j.pbiomolbio.2009.01.005  | pmc=2764399 }}
*{{cite journal | author=Kimura K, Wakamatsu A, Suzuki Y, ''et al.'' |title=Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. |journal=Genome Res. |volume=16 |issue= 1 |pages= 55-65 |year= 2006 |pmid= 16344560 |doi= 10.1101/gr.4039406 }}
*{{cite journal | author=Mehrle A, Rosenfelder H, Schupp I, ''et al.'' |title=The LIFEdb database in 2006. |journal=Nucleic Acids Res. |volume=34 |issue= Database issue |pages= D415-8 |year= 2006 |pmid= 16381901 |doi= 10.1093/nar/gkj139 }}
}}
{{refend}}
{{refend}}


== External links ==
==External links==
* [https://www.ncbi.nlm.nih.gov/books/NBK1517/  GeneReviews/NIH/NCBI/UW entry on Brugada syndrome]
* {{MeshName|SCNB3+protein,+human}}
* {{MeshName|SCNB3+protein,+human}}
{{NLM content}}
{{Ion channels|g2}}
[[Category:Sodium channels]]


{{membrane-protein-stub}}
{{membrane-protein-stub}}
{{NLM content}}
{{Ion channels}}
[[Category:Ion channels]]
{{WikiDoc Sources}}

Latest revision as of 16:07, 29 June 2018

VALUE_ERROR (nil)
Identifiers
Aliases
External IDsGeneCards: [1]
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

n/a

n/a

RefSeq (protein)

n/a

n/a

Location (UCSC)n/an/a
PubMed searchn/an/a
Wikidata
View/Edit Human

Sodium channel subunit beta-3 is a protein that in humans is encoded by the SCN3B gene.[1][2] Two alternatively spliced variants, encoding the same protein, have been identified.

Function

Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel beta subunit gene family, and influences the inactivation kinetics of the sodium channel.[2]

Clinical significance

Mutations in the gene are associated with abnormal cardiac electrophysiology.[3][4]

See also

References

  1. Morgan K, Stevens EB, Shah B, Cox PJ, Dixon AK, Lee K, Pinnock RD, Hughes J, Richardson PJ, Mizuguchi K, Jackson AP (Apr 2000). "β3: An additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics". Proc Natl Acad Sci U S A. 97 (5): 2308–13. doi:10.1073/pnas.030362197. PMC 15797. PMID 10688874.
  2. 2.0 2.1 "Entrez Gene: SCN3B sodium channel, voltage-gated, type III, beta".
  3. Hakim P, Gurung IS, Pedersen TH, Thresher R, Brice N, Lawrence J, Grace AA, Huang CL (2008). "Scn3b knockout mice exhibit abnormal ventricular electrophysiological properties". Prog. Biophys. Mol. Biol. 98 (2–3): 251–66. doi:10.1016/j.pbiomolbio.2009.01.005. PMC 2764399. PMID 19351516.
  4. Hakim P, Brice N, Thresher R, Lawrence J, Zhang Y, Jackson AP, Grace AA, Huang CL (January 2010). "Scn3b knockout mice exhibit abnormal sino-atrial and cardiac conduction properties". Acta Physiol (Oxf). 198 (1): 47–59. doi:10.1111/j.1748-1716.2009.02048.x. PMC 3763209. PMID 19796257.

Further reading

External links

This article incorporates text from the United States National Library of Medicine, which is in the public domain.