GACA sequences
The sequence of TGCGAT was considered the GACA box of the P3 promoter.[1]
GACA sequences occur
GACA sequences A1BG promoters
(r) nn GACA sequences found are 19: GACA at 4507, GACA at 4468, GACA at 4355, GACA at 4181, GACA at 3756, GACA at 3433, GACA at 3412, GACA at 3389, GACA at 2948, GACA at 2880, GACA at 2271, GACA at 2117, GACA at 2015, GACA at 1569, GACA at 1068, GACA at 746, GACA at 559, GACA at 422, GACA at 170.
pn GACA sequences found are 30: GACA at 4399, GACA at 4369, GACA at 4208, GACA at 4121, GACA at 3970, GACA at 3957, GACA at 3709, GACA at 3556, GACA at 3426, GACA at 3319, GACA at 3265, GACA at 3200, GACA at 3061, GACA at 2672, GACA at 2538, GACA at 2337, GACA at 2163, GACA at 2029, GACA at 1911, GACA at 1776, GACA at 1452, GACA at 1258, GACA at 1131, GACA at 1085, GACA at 967, GACA at 919, GACA at 801, GACA at 667, GACA at 477, GACA at 394.
np GACA sequences found are 26: GACA at 4392, GACA at 3640, GACA at 3622, GACA at 3617, GACA at 3434, GACA at 3390, GACA at 3349, GACA at 2957, GACA at 2931, GACA at 2925, GACA at 2342, GACA at 2308, GACA at 2260, GACA at 2250, GACA at 2182, GACA at 2074, GACA at 1998, GACA at 1860, GACA at 1729, GACA at 991, GACA at 916, GACA at 891, GACA at 816, GACA at 264, GACA at 144, GACA at 98.
pp GACA sequences found are 16: GACA at 4332, GACA at 4252, GACA at 3973, GACA at 3893, GACA at 3569, GACA at 3530, GACA at 3131, GACA at 2843, GACA at 2460, GACA at 2412, GACA at 2130, GACA at 1964, GACA at 1869, GACA at 1693, GACA at 712, GACA at 62.
(c) nn CTGT sequences found are 19: CTGT at 4507, CTGT at 4468, CTGT at 4355, CTGT at 4181, CTGT at 3756, CTGT at 3433, CTGT at 3412, CTGT at 3389, CTGT at 2948, CTGT at 2880, CTGT at 2271, CTGT at 2117, CTGT at 2015, CTGT at 1569, CTGT at 1068, CTGT at 746, CTGT at 559, CTGT at 422 and CTGT at 170.
pn CTGT sequences found are 30: CTGT at 4399, CTGT at 4369, CTGT at 4208, CTGT at 4121, CTGT at 3970, CTGT at 3957, CTGT at 3709, CTGT at 3556, CTGT at 3426, CTGT at 3319, CTGT at 3265, CTGT at 3200, CTGT at 3061, CTGT at 2672, CTGT at 2538, CTGT at 2337, CTGT at 2163, CTGT at 2029, CTGT at 1911, CTGT at 1776, CTGT at 1452, CTGT at 1258, CTGT at 1131, CTGT at 1085, CTGT at 967, CTGT at 919, CTGT at 801, CTGT at 667, CTGT at 477, CTGT at 394.
np CTGT sequences found are 26: CTGT at 4392, CTGT at 3640, CTGT at 3622, CTGT at 3617, CTGT at 3434, CTGT at 3390, CTGT at 3349, CTGT at 2957, CTGT at 2931, CTGT at 2925, CTGT at 2342, CTGT at 2308, CTGT at 2260, CTGT at 2250, CTGT at 2182, CTGT at 2074, CTGT at 1998, CTGT at 1860, CTGT at 1729, CTGT at 991, CTGT at 916, CTGT at 891, CTGT at 816, CTGT at 264, CTGT at 144, CTGT at 98.
pp CTGT sequences found are 16: CTGT at 4332, CTGT at 4252, CTGT at 3973, CTGT at 3893, CTGT at 3569, CTGT at 3530, CTGT at 3131, CTGT at 2843, CTGT at 2460, CTGT at 2412, CTGT at 2130, CTGT at 1964, CTGT at 1869, CTGT at 1693, CTGT at 712, CTGT at 62.
(i) nn ACAG sequences found are 13: ACAG at 4370, ACAG at 4209, ACAG at 3832, ACAG at 3622, ACAG at 3320, ACAG at 3201, ACAG at 2985, ACAG at 2164, ACAG at 2030, ACAG at 1221, ACAG at 1086, ACAG at 920, ACAG at 478.
pn ACAG sequences found are 26: ACAG at 4517, ACAG at 4356, ACAG at 4197, ACAG at 3916, ACAG at 3725, ACAG at 3693, ACAG at 3671, ACAG at 2877, ACAG at 2777, ACAG at 2688, ACAG at 2513, ACAG at 2442, ACAG at 2272, ACAG at 2118, ACAG at 2016, ACAG at 1566, ACAG at 1117, ACAG at 1072, ACAG at 906, ACAG at 560, ACAG at 519, ACAG at 423, ACAG at 296, ACAG at 288, ACAG at 167, ACAG at 12.
np ACAG sequences found are 29: ACAG at 4445, ACAG at 4069, ACAG at 3974, ACAG at 3894, ACAG at 3860, ACAG at 3635, ACAG at 3570, ACAG at 3412, ACAG at 3210, ACAG at 3193, ACAG at 3178, ACAG at 3132, ACAG at 3099, ACAG at 2844, ACAG at 2836, ACAG at 2651, ACAG at 2461, ACAG at 2413, ACAG at 2131, ACAG at 2124, ACAG at 1965, ACAG at 1823, ACAG at 1053, ACAG at 717, ACAG at 633, ACAG at 551, ACAG at 364, ACAG at 156, ACAG at 63.
pp ACAG sequences found are 21: ACAG at 4366, ACAG at 3951, ACAG at 3744, ACAG at 3618, ACAG at 3576, ACAG at 3391, ACAG at 3052, ACAG at 3003, ACAG at 2926, ACAG at 2465, ACAG at 2309, ACAG at 2171, ACAG at 2077, ACAG at 1999, ACAG at 1861, ACAG at 1730, ACAG at 992, ACAG at 892, ACAG at 267, ACAG at 99, ACAG at 81.
(ci) nn TGTC sequences found are 26: TGTC at 4517, TGTC at 4356, TGTC at 4197, TGTC at 3916, TGTC at 3725, TGTC at 3693, TGTC at 3671, TGTC at 2877, TGTC at 2777, TGTC at 2688, TGTC at 2513, TGTC at 2442, TGTC at 2272, TGTC at 2118, TGTC at 2016, TGTC at 1566, TGTC at 1117, TGTC at 1072, TGTC at 906, TGTC at 560, TGTC at 519, TGTC at 423, TGTC at 296, TGTC at 288, TGTC at 167, TGTC at 12.
pn TGTC sequences found are 13: TGTC at 4370, TGTC at 4209, TGTC at 3832, TGTC at 3622, TGTC at 3320, TGTC at 3201, TGTC at 2985, TGTC at 2164, TGTC at 2030, TGTC at 1221, TGTC at 1086, TGTC at 920, TGTC at 478.
np TGTC sequences found are 21: TGTC at 4366, TGTC at 3951, TGTC at 3744, TGTC at 3618, TGTC at 3576, TGTC at 3391, TGTC at 3052, TGTC at 3003, TGTC at 2926, TGTC at 2465, TGTC at 2309, TGTC at 2171, TGTC at 2077, TGTC at 1999, TGTC at 1861, TGTC at 1730, TGTC at 992, TGTC at 892, TGTC at 267, TGTC at 99, TGTC at 81.
pp TGTC sequences found are pp 28: TGTC at 4069, TGTC at 3974, TGTC at 3894, TGTC at 3860, TGTC at 3635, TGTC at 3570, TGTC at 3412, TGTC at 3210, TGTC at 3193, TGTC at 3178, TGTC at 3132, TGTC at 3099, TGTC at 2844, TGTC at 2836, TGTC at 2651, TGTC at 2461, TGTC at 2413, TGTC at 2131, TGTC at 2124, TGTC at 1965, TGTC at 1823, TGTC at 1053, TGTC at 717, TGTC at 633, TGTC at 551, TGTC at 364, TGTC at 156, TGTC at 63.
References
- ↑ Wei Ye, Taome Liu, Muzi Zhu, Weimin Zhang, Zilei Huang, Saini Li, Haohua, Haohua Li, Yali Kong, Yuchan Chen (25 November 2019). "An Easy and Efficient Strategy for the Enhancement of Epothilone Production Mediated by TALE-TF and CRISPR/dcas9 Systems in Sorangium cellulosum". Front. Bioeng. Biotechnol. (334). doi:10.3389/fbioe.2019.00334. Text "volume 7 " ignored (help)