User:Marshallsumter

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Editor-In-Chief: Henry A. Hoff

On recent contributions: Associate Editor(s)-in-Chief: Henry A. Hoff

Human genes

Gene expressions

Interactions

Consensus sequences

Binding site for

Inverse copies

For "AGC, one copy in inverse orientation of the AGC box (AGCCGCC) [is] present as two copies (-1346 and -1314) in the ERE".[1]

Enhancer activity

Promoter occurrences

Hypotheses

  1. A1BG has no A boxes in either promoter.
  2. A1BG is not transcribed by an ATA box.
  3. AGCE1 does not participate in the transcription of A1BG.

Samplings

Copying a responsive elements consensus sequence 5'-AAAAAAAA-3' and putting the sequence in "⌘F" finds none between ZNF497 and A1BG or none between ZSCAN22 and A1BG as can be found by the computer programs.

For the Basic programs testing consensus sequence 5'-AAAAAAAA-3' (starting with SuccessablesAAA.bas) written to compare nucleotide sequences with the sequences on either the template strand (-), or coding strand (+), of the DNA, in the negative direction (-), or the positive direction (+), the programs are, are looking for, and found:

  1. negative strand in the negative direction (from ZSCAN22 to A1BG) is SuccessablesAAA--.bas, looking for 5'-AAAAAAAA-3', 0.
  2. negative strand in the positive direction (from ZNF497 to A1BG) is SuccessablesAAA-+.bas, looking for 5'-AAAAAAAA-3', 0.
  3. positive strand, negative direction is SuccessablesAAA+-.bas, looking for 5'-AAAAAAAA-3', 0.
  4. positive strand, positive direction is SuccessablesAAA++.bas, looking for 5'-AAAAAAAA-3', 0.
  5. complement, negative strand, negative direction is SuccessablesAAAc--.bas, looking for 5'-TTTTTTTT-3', 0.
  6. complement, negative strand, positive direction is SuccessablesAAAc-+.bas, looking for 5'-TTTTTTTT-3', 0.
  7. complement, positive strand, negative direction is SuccessablesAAAc+-.bas, looking for 5'-TTTTTTTT-3', 0.
  8. complement, positive strand, positive direction is SuccessablesAAAc++.bas, looking for 5'-TTTTTTTT-3', 0.
  9. inverse complement, negative strand, negative direction is SuccessablesAAAci--.bas, looking for 5'-TTTTTTTT-3', 0.
  10. inverse complement, negative strand, positive direction is SuccessablesAAAci-+.bas, looking for 5'-TTTTTTTT-3', 0.
  11. inverse complement, positive strand, negative direction is SuccessablesAAAci+-.bas, looking for 5'-TTTTTTTT-3', 0.
  12. inverse complement, positive strand, positive direction is SuccessablesAAAci++.bas, looking for 5'-TTTTTTTT-3', 0.
  13. inverse negative strand, negative direction is SuccessablesAAAi--.bas, looking for 5'-AAAAAAAA-3', 0.
  14. inverse negative strand, positive direction is SuccessablesAAAi-+.bas, looking for 5'-AAAAAAAA-3', 0.
  15. inverse positive strand, negative direction is SuccessablesAAAi+-.bas, looking for 5'-AAAAAAAA-3', 0.
  16. inverse positive strand, positive direction is SuccessablesAAAi++.bas, looking for 5'-AAAAAAAA-3', 0.

AAA core promoters

AAA proximal promoters

AAA distal promoters

Acknowledgements

The content on this page was first contributed by: Henry A. Hoff.

Initial content for this page in some instances came from Wikiversity.

Initial content for this page in some instances came from Wikipedia.

Initial content for this page in some instances incorporates text from the United States National Library of Medicine.

See also

References

  1. Gerhard Leubner-Metzger, Luciana Petruzzelli, Rosa Waldvogel, Regina Vögeli-Lange, and Frederick Meins, Jr. (1998). "Ethylene-responsive element binding protein (EREBP) expression and the transcriptional regulation of class I β-1, 3-glucanase during tobacco seed germination". Plant Molecular Biology. 38 (5): 785–95. doi:10.1023/A:1006040425383. Retrieved 2014-05-02. Unknown parameter |month= ignored (help)

External links

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