Non-degenerate nucleotides per response element: Difference between revisions

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(Created page with " {| class="wikitable sortable" |+ Number of non-degenerate nucleotides versus number of response elements |- ! Number of nucleotides !! Letters of nucleotides !! Number of response elements !! Average ± deviation !! Order of list |- | 1 || A || 295 || 295.0 ± 0.0 || 1 |- | 1 || T || 285 || - || 1 |- | 1 || G || 286 || - || 3 |- | 1(4) || C || 300 || 291.5 ± 6 || 5 |- | 2 || AA || 105 || 105 ± 0.0 || 1 |- | 2 || AT || 105 || 105 ± 0.0 || 1 |- | 2 || TA || 74 |...")
 
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Line 66: Line 66:
|-
|-
| 3 || ATG || 17 || - || 12  
| 3 || ATG || 17 || - || 12  
|-
| 3 || ATC || 25 || - || 14
|-
|-
| 3(12) || GGG || 18 || 26.3 ± 8.4 || 16  
| 3(12) || GGG || 18 || 26.3 ± 8.4 || 16  
Line 111: Line 113:
| 4 || CAAC || 3 || - || 12  
| 4 || CAAC || 3 || - || 12  
|-
|-
| 4 || TTTC || 8 || 6.29 ± 2.04 || 16  
| 4 || CCAA || 10 || - || 14
|-
| 4 || TTTC || 8 || - || 16  
|-
|-
| 4 || ATGT || 6 || - || 50  
| 4 || ATGT || 6 || - || 50  
Line 121: Line 125:
| 4 || GAAA || 14 || - || 137  
| 4 || GAAA || 14 || - || 137  
|-
|-
| 4(27) || AAAT || 8 || 7.64 ± 2.63 || 137  
| 4(28) || AAAT || 8 || 7.64 ± 2.63 || 137  
|-
|-
| 5 || ATAAA || 3 || 0.0 ± 0.0 || 1  
| 5 || ATAAA || 3 || 0.0 ± 0.0 || 1  
Line 156: Line 160:
|-
|-
| 5 || CATGG || 2 || - || 12  
| 5 || CATGG || 2 || - || 12  
|-
| 5 || CAATC || 2 || - || 14
|-
| 5 || CCAAT || 5 || - || 14
|-
|-
| 5 || TGTGA || 2 || 3.43 ± 1.92 || 137  
| 5 || TGTGA || 2 || 3.43 ± 1.92 || 137  
Line 192: Line 200:
|-
|-
| 6 || CCAATC || 2 || - || 14  
| 6 || CCAATC || 2 || - || 14  
|-
| 6 || TACCCC || 1 || - || 15
|-
| 6 || ACCCCC || 1 || - || 15
|-
| 6 || CCCCCC || 1 || - || 15
|-
| 6 || CCCCCT || 1 || - || 15
|-
|-
| 6 || ATGTGA || 2 || 2.222 ± 1.592 || 137  
| 6 || ATGTGA || 2 || 2.222 ± 1.592 || 137  
Line 218: Line 234:
|-
|-
| 7 || TGGCAAC || 1 || 1.0 ± 0.0 || 12  
| 7 || TGGCAAC || 1 || 1.0 ± 0.0 || 12  
|-
| 7 || TTACCCC || 1 || 1.0 ± 0.0 || 15
|-
| 7 || TACCCCC || 1 || 1.0 ± 0.0 || 15
|-
| 7 || ACCCCCC || 1 || 1.0 ± 0.0 || 15
|-
| 7 || CCCCCCC || 1 || 1.0 ± 0.0 || 15
|-
| 7 || CCCCCCT || 1 || 1.0 ± 0.0 || 15
|-
| 7 || CCCCCTT || 1 || 1.0 ± 0.0 || 15
|-
|-
| 7 || ATGTGAA || 2 || - || 137  
| 7 || ATGTGAA || 2 || - || 137  
Line 238: Line 266:
|-
|-
| 8 || ATGGCAAC || 1 || - || 12  
| 8 || ATGGCAAC || 1 || - || 12  
|-
| 8 || TTACCCCC || 1 || 1.0 || 15
|-
| 8 || TACCCCCC || 1 || 1.0 || 15
|-
| 8 || ACCCCCCC || 1 || 1.0 || 15
|-
| 8 || CCCCCCCT || 1 || 1.0 || 15
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| 8 || CCCCCCTT || 1 || 1.0 || 15
|-
|-
| 8 || ATGTGAAA || 2 || - || 137  
| 8 || ATGTGAAA || 2 || - || 137  
Line 257: Line 295:
| 9 || GTTGGCATG || 1 || 1.0 || 12  
| 9 || GTTGGCATG || 1 || 1.0 || 12  
|-
|-
| 9(7) || ATGTGAAAT || 2 || 1.14 ± 0.24 || 137  
| 9 || TTACCCCCC || 1 || 1.0 || 15
|-
| 9 || TACCCCCCC || 1 || 1.0 || 15
|-
| 9 || ACCCCCCCT || 1 || 1.0 || 15
|-
| 9 || CCCCCCCTT || 1 || 1.0 || 15
|-
| 9(11) || ATGTGAAAT || 2 || 1.14 ± 0.24 || 137  
|-
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| 10 || GCATGGCAAC || 1 || 1.0 || 12  
| 10 || GCATGGCAAC || 1 || 1.0 || 12  
Line 267: Line 313:
| 10 || TTGGCATGGC || 1 || 1.0 || 12  
| 10 || TTGGCATGGC || 1 || 1.0 || 12  
|-
|-
| 10(5) || GTTGGCATGG || 1 || 1.0 || 12
| 10 || GTTGGCATGG || 1 || 1.0 || 12
|-
| 10 || TTACCCCCCC || 1 || 1.0 || 15
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| 10 || TACCCCCCCT || 1 || 1.0 || 15
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| 10(8) || ACCCCCCCTT || 1 || 1.0 || 15
|-
|-
| 11 || GGCATGGCAAC || 1 || 1.0 || 12  
| 11 || GGCATGGCAAC || 1 || 1.0 || 12  
Line 275: Line 327:
| 11 || TTGGCATGGCA || 1 || 1.0 || 12  
| 11 || TTGGCATGGCA || 1 || 1.0 || 12  
|-
|-
| 11(4) || GTTGGCATGGC || 1 || 1.0 || 12
| 11 || GTTGGCATGGC || 1 || 1.0 || 12
|-
| 11(5) || TTACCCCCCCT || 1 || 1.0 || 15
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| 11(6) || TACCCCCCCTT || 1 || 1.0 || 15
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| 12 || TGGCATGGCAAC || 1 || 1.0 || 12  
| 12 || TGGCATGGCAAC || 1 || 1.0 || 12  
Line 281: Line 337:
| 12 || TTGGCATGGCAA || 1 || 1.0 || 12  
| 12 || TTGGCATGGCAA || 1 || 1.0 || 12  
|-
|-
| 12(3) || GTTGGCATGGCA || 1 || 1.0 || 12
| 12 || GTTGGCATGGCA || 1 || 1.0 || 12
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| 12(4) || TTACCCCCCCTT || 1 || 1.0 || 15
|-
|-
| 13 || TTGGCATGGCAAC || 1 || 1.0 || 12  
| 13 || TTGGCATGGCAAC || 1 || 1.0 || 12  

Revision as of 19:30, 3 March 2024

Number of non-degenerate nucleotides versus number of response elements
Number of nucleotides Letters of nucleotides Number of response elements Average ± deviation Order of list
1 A 295 295.0 ± 0.0 1
1 T 285 - 1
1 G 286 - 3
1(4) C 300 291.5 ± 6 5
2 AA 105 105 ± 0.0 1
2 AT 105 105 ± 0.0 1
2 TA 74 - 1
2 AC 103 - 5
2 CG 102 - 5
2 CA 136 - 7
2 TG 112 - 7
2 AG 63 - 8
2 CC 101 - 8
2 GC 74 - 8
2 CT 67 - 11
2 GG 92 - 12
2 GT 106 - 12
2 TT 91 - 12
2 TC 122 - 14
2(16) GA 106 97.4 ± 15.5 16
3 AAC 22 22.0 ± 0.0 5
3 ACG 39 30.5 ± 8.5 5
3 GCC 30 - 8
3 CCG 21 - 8
3 CTA 11 - 11
3 ACC 25 - 11
3 GGC 25 - 12
3 TTG 13 - 12
3 GCA 9 - 12
3 CAT 32 - 12
3 ATG 17 - 12
3 ATC 25 - 14
3(12) GGG 18 26.3 ± 8.4 16
4 AAAA 6 6.0 ± 0.0 1
4 TAAA 6 6.0 ± 0.0 1
4 ATAA 10 7.33 ± 1.78 1
4 TATA 8 7.5 ± 1.5 1
4 AACG 4 6.8 ± 1.76 5
4 AGCC 2 6.0 ± 2.00 8
4 GCCG 4 - 8
4 CCGC 10 - 8
4 CGCC 11 - 8
4 CTAA 5 - 11
4 AACC 4 - 11
4 TAAC 6 - 11
4 GCAA 2 - 12
4 GTTG 3 - 12
4 TTGG 4 - 12
4 TGGC 6 - 12
4 GGCA 3 - 12
4 GCAT 5 - 12
4 CATG 7 - 12
4 ATGG 4 - 12
4 CAAC 3 - 12
4 CCAA 10 - 14
4 TTTC 8 - 16
4 ATGT 6 - 50
4 GTGA 7 - 137
4 TGAA 5 - 137
4 GAAA 14 - 137
4(28) AAAT 8 7.64 ± 2.63 137
5 ATAAA 3 0.0 ± 0.0 1
5 TATAA 4 3.5 ± 0.5 1
5 TAAAA 1 2.67 1
5 AGCCG 1 2.25 8
5 GCCGC 4 2.60 ± 1.28 8
5 CCGCC 9 3.67 ± 2 8
5 CTAAC 1 - 11
5 TAACC 2 - 11
5 GGCAT 1 - 12
5 ATGGC 1 - 12
5 GCAAC 1 - 12
5 TGGCA 2 - 12
5 GGCAA 2 - 12
5 GTTGG 2 - 12
5 TTGGC 2 - 12
5 GCATG 2 - 12
5 CATGG 2 - 12
5 CAATC 2 - 14
5 CCAAT 5 - 14
5 TGTGA 2 3.43 ± 1.92 137
5 GTGAA 3 3.38 ± 1.72 137
5(20) ATGTG 3 3.33 ± 1.55 137
6 TATAAA 2 2.0 1
6 ATAAAA 1 1.5 1
6 AGCCGC 1 - 8
6 GCCGCC 4 2.375 ± 1.563 8
6 CTAACC 1 1.5 11
6 GTTGGC 1 - 12
6 TTGGCA 1 - 12
6 TGGCAT 1 - 12
6 GGCATG 1 - 12
6 GCATGG 1 - 12
6 CATGGC 1 - 12
6 ATGGCA 1 - 12
6 GGCAAC 1 - 12
6 TGGCAA 2 - 12
6 CCAATC 2 - 14
6 TACCCC 1 - 15
6 ACCCCC 1 - 15
6 CCCCCC 1 - 15
6 CCCCCT 1 - 15
6 ATGTGA 2 2.222 ± 1.592 137
6 TGTGAA 2 2.10 ± 1.35 137
6(18) TGAAAT 3 2.36 ± 1.32 137
7 TATAAAA 1 1.0 ± 0.0 1
7 AGCCGCC 1 1.0 ± 0.0 8
7 GTTGGCA 1 1.0 ± 0.0 12
7 TTGGCAT 1 1.0 ± 0.0 12
7 TGGCATG 1 1.0 ± 0.0 12
7 GGCATGG 1 1.0 ± 0.0 12
7 GCATGGC 1 1.0 ± 0.0 12
7 CATGGCA 1 1.0 ± 0.0 12
7 ATGGCAA 1 1.0 ± 0.0 12
7 TGGCAAC 1 1.0 ± 0.0 12
7 TTACCCC 1 1.0 ± 0.0 15
7 TACCCCC 1 1.0 ± 0.0 15
7 ACCCCCC 1 1.0 ± 0.0 15
7 CCCCCCC 1 1.0 ± 0.0 15
7 CCCCCCT 1 1.0 ± 0.0 15
7 CCCCCTT 1 1.0 ± 0.0 15
7 ATGTGAA 2 - 137
7 TGTGAAA 2 - 137
7(13) GTGAAAT 2 1.23 ± 0.35 137
8 GTTGGCAT 1 - 12
8 TTGGCATG 1 - 12
8 TGGCATGG 1 - 12
8 GGCATGGC 1 - 12
8 GCATGGCA 1 - 12
8 CATGGCAA 1 - 12
8 ATGGCAAC 1 - 12
8 TTACCCCC 1 1.0 15
8 TACCCCCC 1 1.0 15
8 ACCCCCCC 1 1.0 15
8 CCCCCCCT 1 1.0 15
8 CCCCCCTT 1 1.0 15
8 ATGTGAAA 2 - 137
8 TGTGAAAT 2 - 137
8(10) TTCACATG 1 1.2 ± 0.32 138
9 CATGGCAAC 1 1.0 12
9 GCATGGCAA 1 1.0 12
9 GGCATGGCA 1 1.0 12
9 TGGCATGGC 1 1.0 12
9 TTGGCATGG 1 1.0 12
9 GTTGGCATG 1 1.0 12
9 TTACCCCCC 1 1.0 15
9 TACCCCCCC 1 1.0 15
9 ACCCCCCCT 1 1.0 15
9 CCCCCCCTT 1 1.0 15
9(11) ATGTGAAAT 2 1.14 ± 0.24 137
10 GCATGGCAAC 1 1.0 12
10 GGCATGGCAA 1 1.0 12
10 TGGCATGGCA 1 1.0 12
10 TTGGCATGGC 1 1.0 12
10 GTTGGCATGG 1 1.0 12
10 TTACCCCCCC 1 1.0 15
10 TACCCCCCCT 1 1.0 15
10(8) ACCCCCCCTT 1 1.0 15
11 GGCATGGCAAC 1 1.0 12
11 TGGCATGGCAA 1 1.0 12
11 TTGGCATGGCA 1 1.0 12
11 GTTGGCATGGC 1 1.0 12
11(5) TTACCCCCCCT 1 1.0 15
11(6) TACCCCCCCTT 1 1.0 15
12 TGGCATGGCAAC 1 1.0 12
12 TTGGCATGGCAA 1 1.0 12
12 GTTGGCATGGCA 1 1.0 12
12(4) TTACCCCCCCTT 1 1.0 15
13 TTGGCATGGCAAC 1 1.0 12
13(2) GTTGGCATGGCAA 1 1.0 12
14(1) GTTGGCATGGCAAC 1 1.0 12
17(1) TTTCGTTGGAAGCGGGA 1 1.0 16
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