Small nuclear ribonucleoprotein D2: Difference between revisions
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{{ | '''Small nuclear ribonucleoprotein Sm D2''' is a [[protein]] that in humans is encoded by the ''SNRPD2'' [[gene]].<ref name="pmid7527560">{{cite journal |vauthors=Lehmeier T, Raker V, Hermann H, Luhrmann R | title = cDNA cloning of the Sm proteins D2 and D3 from human small nuclear ribonucleoproteins: evidence for a direct D1-D2 interaction | journal = Proc Natl Acad Sci U S A | volume = 91 | issue = 25 | pages = 12317–21 |date=January 1995 | pmid = 7527560 | pmc = 45428 | doi =10.1073/pnas.91.25.12317 }}</ref><ref name="pmid1701240">{{cite journal |vauthors=Lehmeier T, Foulaki K, Luhrmann R | title = Evidence for three distinct D proteins, which react differentially with anti-Sm autoantibodies, in the cores of the major snRNPs U1, U2, U4/U6 and U5 | journal = Nucleic Acids Res | volume = 18 | issue = 22 | pages = 6475–84 |date=January 1991 | pmid = 1701240 | pmc = 332598 | doi =10.1093/nar/18.22.6475 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=6633| accessdate = }}</ref> | ||
}} | |||
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{{PBB_Summary | {{PBB_Summary | ||
| section_title = | | section_title = | ||
| summary_text = The protein encoded by this gene belongs to the small nuclear ribonucleoprotein core protein family. It is required for pre-mRNA splicing and small nuclear ribonucleoprotein biogenesis. Alternative splicing occurs at this locus and two transcript variants encoding the same protein have been identified.<ref name="entrez" | | summary_text = The protein encoded by this gene belongs to the small nuclear ribonucleoprotein core protein family. It is required for pre-mRNA splicing and small nuclear ribonucleoprotein biogenesis. Alternative splicing occurs at this locus and two transcript variants encoding the same protein have been identified.<ref name="entrez"/> | ||
}} | }} | ||
==Interactions== | |||
Small nuclear ribonucleoprotein D2 has been shown to [[Protein-protein interaction|interact]] with [[DDX20]],<ref name=pmid10601333>{{cite journal |doi=10.1083/jcb.147.6.1181 |last=Charroux |first=B |authorlink= |author2=Pellizzoni L |author3=Perkinson R A |author4=Shevchenko A |author5=Mann M |author6=Dreyfuss G |date=December 1999 |title=Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems |journal=J. Cell Biol. |volume=147 |issue=6 |pages=1181–94 |publisher= |location = UNITED STATES| issn = 0021-9525| pmid = 10601333 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = |pmc=2168095 }}</ref> [[Small nuclear ribonucleoprotein D1]],<ref name=pmid9417867>{{cite journal |last=Fury |first=M G |authorlink= |author2=Zhang W |author3=Christodoulopoulos I |author4=Zieve G W |date=November 1997 |title=Multiple protein: protein interactions between the snRNP common core proteins |journal=Exp. Cell Res. |volume=237 |issue=1 |pages=63–9 |publisher= |location = UNITED STATES| issn = 0014-4827| pmid = 9417867 |doi = 10.1006/excr.1997.3750 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref><ref name=pmid10025403>{{cite journal |doi=10.1016/S0092-8674(00)80550-4 |last=Kambach |first=C |authorlink= |author2=Walke S |author3=Young R |author4=Avis J M |author5=de la Fortelle E |author6=Raker V A |author7=Lührmann R |author8=Li J |author9=Nagai K |date=February 1999 |title=Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs |journal=Cell |volume=96 |issue=3 |pages=375–87 |publisher= |location = UNITED STATES| issn = 0092-8674| pmid = 10025403 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref> [[Small nuclear ribonucleoprotein polypeptide F]],<ref name=pmid9417867/> [[CDC5L]]<ref name=pmid11101529>{{cite journal |last=Ajuh |first=P |authorlink= |author2=Kuster B |author3=Panov K |author4=Zomerdijk J C |author5=Mann M |author6=Lamond A I |date=December 2000 |title=Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry |journal=EMBO J. |volume=19 |issue=23 |pages=6569–81 |publisher= |location = ENGLAND| issn = 0261-4189| pmid = 11101529 |doi = 10.1093/emboj/19.23.6569 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = |pmc=305846 }}</ref> and [[SMN1]].<ref name=pmid10942426>{{cite journal |doi=10.1093/hmg/9.13.1977 |last=Meister |first=G |authorlink= |author2=Bühler D |author3=Laggerbauer B |author4=Zobawa M |author5=Lottspeich F |author6=Fischer U |date=August 2000 |title=Characterization of a nuclear 20S complex containing the survival of motor neurons (SMN) protein and a specific subset of spliceosomal Sm proteins |journal=Hum. Mol. Genet. |volume=9 |issue=13 |pages=1977–86 |publisher= |location = ENGLAND| issn = 0964-6906| pmid = 10942426 | bibcode = | oclc =| id = | url = | language = | format = | accessdate = | laysummary = | laysource = | laydate = | quote = }}</ref> | |||
==References== | ==References== | ||
{{reflist | {{reflist}} | ||
==Further reading== | ==Further reading== | ||
{{refbegin | 2}} | {{refbegin | 2}} | ||
{{PBB_Further_reading | {{PBB_Further_reading | ||
| citations = | | citations = | ||
*{{cite journal | | *{{cite journal |vauthors=Rokeach LA, Haselby JA, Hoch SO |title=Molecular cloning of a cDNA encoding the human Sm-D autoantigen. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=85 |issue= 13 |pages= 4832–6 |year= 1988 |pmid= 3260384 |doi=10.1073/pnas.85.13.4832 | pmc=280530 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Liu Q, Fischer U, Wang F, Dreyfuss G |title=The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins. |journal=Cell |volume=90 |issue= 6 |pages= 1013–21 |year= 1997 |pmid= 9323129 |doi=10.1016/S0092-8674(00)80367-0 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Fury MG, Zhang W, Christodoulopoulos I, Zieve GW |title=Multiple protein: protein interactions between the snRNP common core proteins. |journal=Exp. Cell Res. |volume=237 |issue= 1 |pages= 63–9 |year= 1998 |pmid= 9417867 |doi= 10.1006/excr.1997.3750 }} | ||
*{{cite journal | *{{cite journal |vauthors=Kambach C, Walke S, Young R, etal |title=Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. |journal=Cell |volume=96 |issue= 3 |pages= 375–87 |year= 1999 |pmid= 10025403 |doi=10.1016/S0092-8674(00)80550-4 }} | ||
*{{cite journal | *{{cite journal |vauthors=Charroux B, Pellizzoni L, Perkinson RA, etal |title=Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems. |journal=J. Cell Biol. |volume=147 |issue= 6 |pages= 1181–94 |year= 2000 |pmid= 10601333 |doi=10.1083/jcb.147.6.1181 | pmc=2168095 }} | ||
*{{cite journal | *{{cite journal |vauthors=Charroux B, Pellizzoni L, Perkinson RA, etal |title=Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli. |journal=J. Cell Biol. |volume=148 |issue= 6 |pages= 1177–86 |year= 2000 |pmid= 10725331 |doi=10.1083/jcb.148.6.1177 | pmc=2174312 }} | ||
*{{cite journal | *{{cite journal |vauthors=Meister G, Bühler D, Laggerbauer B, etal |title=Characterization of a nuclear 20S complex containing the survival of motor neurons (SMN) protein and a specific subset of spliceosomal Sm proteins. |journal=Hum. Mol. Genet. |volume=9 |issue= 13 |pages= 1977–86 |year= 2000 |pmid= 10942426 |doi=10.1093/hmg/9.13.1977 }} | ||
*{{cite journal | *{{cite journal |vauthors=Ajuh P, Kuster B, Panov K, etal |title=Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. |journal=EMBO J. |volume=19 |issue= 23 |pages= 6569–81 |year= 2001 |pmid= 11101529 |doi= 10.1093/emboj/19.23.6569 | pmc=305846 }} | ||
*{{cite journal | *{{cite journal |vauthors=Selenko P, Sprangers R, Stier G, etal |title=SMN tudor domain structure and its interaction with the Sm proteins. |journal=Nat. Struct. Biol. |volume=8 |issue= 1 |pages= 27–31 |year= 2001 |pmid= 11135666 |doi= 10.1038/83014 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Urlaub H, Raker VA, Kostka S, Lührmann R |title=Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure. |journal=EMBO J. |volume=20 |issue= 1-2 |pages= 187–96 |year= 2001 |pmid= 11226169 |doi= 10.1093/emboj/20.1.187 | pmc=140196 }} | ||
*{{cite journal | *{{cite journal |vauthors=Gubitz AK, Mourelatos Z, Abel L, etal |title=Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins. |journal=J. Biol. Chem. |volume=277 |issue= 7 |pages= 5631–6 |year= 2002 |pmid= 11714716 |doi= 10.1074/jbc.M109448200 }} | ||
*{{cite journal | *{{cite journal |vauthors=Pellizzoni L, Baccon J, Rappsilber J, etal |title=Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component. |journal=J. Biol. Chem. |volume=277 |issue= 9 |pages= 7540–5 |year= 2002 |pmid= 11748230 |doi= 10.1074/jbc.M110141200 }} | ||
*{{cite journal | *{{cite journal |vauthors=Friesen WJ, Wyce A, Paushkin S, etal |title=A novel WD repeat protein component of the methylosome binds Sm proteins. |journal=J. Biol. Chem. |volume=277 |issue= 10 |pages= 8243–7 |year= 2002 |pmid= 11756452 |doi= 10.1074/jbc.M109984200 }} | ||
*{{cite journal | | *{{cite journal |vauthors=Fong YW, Zhou Q |title=Stimulatory effect of splicing factors on transcriptional elongation. |journal=Nature |volume=414 |issue= 6866 |pages= 929–33 |year= 2002 |pmid= 11780068 |doi= 10.1038/414929a }} | ||
*{{cite journal | *{{cite journal |vauthors=Jurica MS, Licklider LJ, Gygi SR, etal |title=Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. |journal=RNA |volume=8 |issue= 4 |pages= 426–39 |year= 2002 |pmid= 11991638 |doi=10.1017/S1355838202021088 | pmc=1370266 }} | ||
*{{cite journal | *{{cite journal |vauthors=Baccon J, Pellizzoni L, Rappsilber J, etal |title=Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex. |journal=J. Biol. Chem. |volume=277 |issue= 35 |pages= 31957–62 |year= 2002 |pmid= 12065586 |doi= 10.1074/jbc.M203478200 }} | ||
*{{cite journal | *{{cite journal |vauthors=Strausberg RL, Feingold EA, Grouse LH, etal |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899–903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 | pmc=139241 }} | ||
*{{cite journal |vauthors=Blagoev B, Kratchmarova I, Ong SE, etal |title=A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. |journal=Nat. Biotechnol. |volume=21 |issue= 3 |pages= 315–8 |year= 2003 |pmid= 12577067 |doi= 10.1038/nbt790 }} | |||
*{{cite journal | |||
}} | }} | ||
{{refend}} | {{refend}} | ||
{{PDB Gallery|geneid=6633}} | |||
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{{Ribonucleoproteins}} | |||
Revision as of 00:03, 12 September 2017
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| External IDs | GeneCards: [1] | ||||||
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| Species | Human | Mouse | |||||
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| Location (UCSC) | n/a | n/a | |||||
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Small nuclear ribonucleoprotein Sm D2 is a protein that in humans is encoded by the SNRPD2 gene.[1][2][3]
The protein encoded by this gene belongs to the small nuclear ribonucleoprotein core protein family. It is required for pre-mRNA splicing and small nuclear ribonucleoprotein biogenesis. Alternative splicing occurs at this locus and two transcript variants encoding the same protein have been identified.[3]
Interactions
Small nuclear ribonucleoprotein D2 has been shown to interact with DDX20,[4] Small nuclear ribonucleoprotein D1,[5][6] Small nuclear ribonucleoprotein polypeptide F,[5] CDC5L[7] and SMN1.[8]
References
- ↑ Lehmeier T, Raker V, Hermann H, Luhrmann R (January 1995). "cDNA cloning of the Sm proteins D2 and D3 from human small nuclear ribonucleoproteins: evidence for a direct D1-D2 interaction". Proc Natl Acad Sci U S A. 91 (25): 12317–21. doi:10.1073/pnas.91.25.12317. PMC 45428. PMID 7527560.
- ↑ Lehmeier T, Foulaki K, Luhrmann R (January 1991). "Evidence for three distinct D proteins, which react differentially with anti-Sm autoantibodies, in the cores of the major snRNPs U1, U2, U4/U6 and U5". Nucleic Acids Res. 18 (22): 6475–84. doi:10.1093/nar/18.22.6475. PMC 332598. PMID 1701240.
- ↑ 3.0 3.1 "Entrez Gene: SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa".
- ↑ Charroux, B; Pellizzoni L; Perkinson R A; Shevchenko A; Mann M; Dreyfuss G (December 1999). "Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems". J. Cell Biol. UNITED STATES. 147 (6): 1181–94. doi:10.1083/jcb.147.6.1181. ISSN 0021-9525. PMC 2168095. PMID 10601333.
- ↑ 5.0 5.1 Fury, M G; Zhang W; Christodoulopoulos I; Zieve G W (November 1997). "Multiple protein: protein interactions between the snRNP common core proteins". Exp. Cell Res. UNITED STATES. 237 (1): 63–9. doi:10.1006/excr.1997.3750. ISSN 0014-4827. PMID 9417867.
- ↑ Kambach, C; Walke S; Young R; Avis J M; de la Fortelle E; Raker V A; Lührmann R; Li J; Nagai K (February 1999). "Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs". Cell. UNITED STATES. 96 (3): 375–87. doi:10.1016/S0092-8674(00)80550-4. ISSN 0092-8674. PMID 10025403.
- ↑ Ajuh, P; Kuster B; Panov K; Zomerdijk J C; Mann M; Lamond A I (December 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. ENGLAND. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. ISSN 0261-4189. PMC 305846. PMID 11101529.
- ↑ Meister, G; Bühler D; Laggerbauer B; Zobawa M; Lottspeich F; Fischer U (August 2000). "Characterization of a nuclear 20S complex containing the survival of motor neurons (SMN) protein and a specific subset of spliceosomal Sm proteins". Hum. Mol. Genet. ENGLAND. 9 (13): 1977–86. doi:10.1093/hmg/9.13.1977. ISSN 0964-6906. PMID 10942426.
Further reading
- Rokeach LA, Haselby JA, Hoch SO (1988). "Molecular cloning of a cDNA encoding the human Sm-D autoantigen". Proc. Natl. Acad. Sci. U.S.A. 85 (13): 4832–6. doi:10.1073/pnas.85.13.4832. PMC 280530. PMID 3260384.
- Liu Q, Fischer U, Wang F, Dreyfuss G (1997). "The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins". Cell. 90 (6): 1013–21. doi:10.1016/S0092-8674(00)80367-0. PMID 9323129.
- Fury MG, Zhang W, Christodoulopoulos I, Zieve GW (1998). "Multiple protein: protein interactions between the snRNP common core proteins". Exp. Cell Res. 237 (1): 63–9. doi:10.1006/excr.1997.3750. PMID 9417867.
- Kambach C, Walke S, Young R, et al. (1999). "Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs". Cell. 96 (3): 375–87. doi:10.1016/S0092-8674(00)80550-4. PMID 10025403.
- Charroux B, Pellizzoni L, Perkinson RA, et al. (2000). "Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems". J. Cell Biol. 147 (6): 1181–94. doi:10.1083/jcb.147.6.1181. PMC 2168095. PMID 10601333.
- Charroux B, Pellizzoni L, Perkinson RA, et al. (2000). "Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli". J. Cell Biol. 148 (6): 1177–86. doi:10.1083/jcb.148.6.1177. PMC 2174312. PMID 10725331.
- Meister G, Bühler D, Laggerbauer B, et al. (2000). "Characterization of a nuclear 20S complex containing the survival of motor neurons (SMN) protein and a specific subset of spliceosomal Sm proteins". Hum. Mol. Genet. 9 (13): 1977–86. doi:10.1093/hmg/9.13.1977. PMID 10942426.
- Ajuh P, Kuster B, Panov K, et al. (2001). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.
- Selenko P, Sprangers R, Stier G, et al. (2001). "SMN tudor domain structure and its interaction with the Sm proteins". Nat. Struct. Biol. 8 (1): 27–31. doi:10.1038/83014. PMID 11135666.
- Urlaub H, Raker VA, Kostka S, Lührmann R (2001). "Sm protein-Sm site RNA interactions within the inner ring of the spliceosomal snRNP core structure". EMBO J. 20 (1–2): 187–96. doi:10.1093/emboj/20.1.187. PMC 140196. PMID 11226169.
- Gubitz AK, Mourelatos Z, Abel L, et al. (2002). "Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins". J. Biol. Chem. 277 (7): 5631–6. doi:10.1074/jbc.M109448200. PMID 11714716.
- Pellizzoni L, Baccon J, Rappsilber J, et al. (2002). "Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component". J. Biol. Chem. 277 (9): 7540–5. doi:10.1074/jbc.M110141200. PMID 11748230.
- Friesen WJ, Wyce A, Paushkin S, et al. (2002). "A novel WD repeat protein component of the methylosome binds Sm proteins". J. Biol. Chem. 277 (10): 8243–7. doi:10.1074/jbc.M109984200. PMID 11756452.
- Fong YW, Zhou Q (2002). "Stimulatory effect of splicing factors on transcriptional elongation". Nature. 414 (6866): 929–33. doi:10.1038/414929a. PMID 11780068.
- Jurica MS, Licklider LJ, Gygi SR, et al. (2002). "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis". RNA. 8 (4): 426–39. doi:10.1017/S1355838202021088. PMC 1370266. PMID 11991638.
- Baccon J, Pellizzoni L, Rappsilber J, et al. (2002). "Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex". J. Biol. Chem. 277 (35): 31957–62. doi:10.1074/jbc.M203478200. PMID 12065586.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Blagoev B, Kratchmarova I, Ong SE, et al. (2003). "A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling". Nat. Biotechnol. 21 (3): 315–8. doi:10.1038/nbt790. PMID 12577067.
