RAB5B: Difference between revisions

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Revision as of 20:42, 8 November 2017

Ras-related protein Rab-5B is a protein that in humans is encoded by the RAB5B gene.^[1]^[2]^[3]

References

↑ Wilson DB, Wilson MP (Apr 1992). "Identification and subcellular localization of human rab5b, a new member of the ras-related superfamily of GTPases". J Clin Invest. 89 (3): 996–1005. doi:10.1172/JCI115683. PMC 442949. PMID 1541686.
↑ Chiariello M, Bruni CB, Bucci C (Aug 1999). "The small GTPases Rab5a, Rab5b and Rab5c are differentially phosphorylated in vitro". FEBS Lett. 453 (1–2): 20–4. doi:10.1016/S0014-5793(99)00686-9. PMID 10403367.
↑ "Entrez Gene: RAB5B RAB5B, member RAS oncogene family".

Bucci C, Lütcke A, Steele-Mortimer O, Olkkonen VM, Dupree P, Chiariello M, Bruni CB, Simons K, Zerial M (1995). "Co-operative regulation of endocytosis by three Rab5 isoforms". FEBS Lett. 366 (1): 65–71. doi:10.1016/0014-5793(95)00477-Q. PMID 7789520.
Korenberg JR, Chen XN, Adams MD, Venter JC (1996). "Toward a cDNA map of the human genome". Genomics. 29 (2): 364–70. doi:10.1006/geno.1995.9993. PMID 8666383.
Bao S, Zhu J, Garvey WT (1999). "Cloning of Rab GTPases expressed in human skeletal muscle: studies in insulin-resistant subjects". Horm. Metab. Res. 30 (11): 656–62. doi:10.1055/s-2007-978953. PMID 9918381.
Callaghan J, Nixon S, Bucci C, Toh BH, Stenmark H (1999). "Direct interaction of EEA1 with Rab5b". Eur. J. Biochem. 265 (1): 361–6. doi:10.1046/j.1432-1327.1999.00743.x. PMID 10491193.
Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC 310948. PMID 11076863.
Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A (2001). "Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs". Genome Res. 11 (3): 422–35. doi:10.1101/gr.GR1547R. PMC 311072. PMID 11230166.
Simpson JC, Wellenreuther R, Poustka A, Pepperkok R, Wiemann S (2001). "Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing". EMBO Rep. 1 (3): 287–92. doi:10.1093/embo-reports/kvd058. PMC 1083732. PMID 11256614.
Tall GG, Barbieri MA, Stahl PD, Horazdovsky BF (2001). "Ras-activated endocytosis is mediated by the Rab5 guanine nucleotide exchange activity of RIN1". Dev. Cell. 1 (1): 73–82. doi:10.1016/S1534-5807(01)00008-9. PMID 11703925.
Saito K, Murai J, Kajiho H, Kontani K, Kurosu H, Katada T (2002). "A novel binding protein composed of homophilic tetramer exhibits unique properties for the small GTPase Rab5". J. Biol. Chem. 277 (5): 3412–8. doi:10.1074/jbc.M106276200. PMID 11733506.
Merithew E, Stone C, Eathiraj S, Lambright DG (2003). "Determinants of Rab5 interaction with the N terminus of early endosome antigen 1". J. Biol. Chem. 278 (10): 8494–500. doi:10.1074/jbc.M211514200. PMID 12493736.
Kajiho H, Saito K, Tsujita K, Kontani K, Araki Y, Kurosu H, Katada T (2004). "RIN3: a novel Rab5 GEF interacting with amphiphysin II involved in the early endocytic pathway". J. Cell Sci. 116 (Pt 20): 4159–68. doi:10.1242/jcs.00718. PMID 12972505.
Wiemann S, Arlt D, Huber W, Wellenreuther R, Schleeger S, Mehrle A, Bechtel S, Sauermann M, Korf U, Pepperkok R, Sültmann H, Poustka A (2004). "From ORFeome to biology: a functional genomics pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC 528930. PMID 15489336.
Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC 1347501. PMID 16381901.
Chi A, Valencia JC, Hu ZZ, Watabe H, Yamaguchi H, Mangini NJ, Huang H, Canfield VA, Cheng KC, Yang F, Abe R, Yamagishi S, Shabanowitz J, Hearing VJ, Wu C, Appella E, Hunt DF (2007). "Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes". J. Proteome Res. 5 (11): 3135–44. doi:10.1021/pr060363j. PMID 17081065.
Hirota Y, Kuronita T, Fujita H, Tanaka Y (2007). "A role for Rab5 activity in the biogenesis of endosomal and lysosomal compartments". Biochem. Biophys. Res. Commun. 364 (1): 40–7. doi:10.1016/j.bbrc.2007.09.089. PMID 17927960.

This article on a gene on human chromosome 12 is a stub. You can help Wikipedia by expanding it.

[pmid1541686-1] Wilson DB, Wilson MP (Apr 1992). "Identification and subcellular localization of human rab5b, a new member of the ras-related superfamily of GTPases". J Clin Invest. 89 (3): 996–1005. doi:10.1172/JCI115683. PMC 442949. PMID 1541686.

[pmid10403367-2] Chiariello M, Bruni CB, Bucci C (Aug 1999). "The small GTPases Rab5a, Rab5b and Rab5c are differentially phosphorylated in vitro". FEBS Lett. 453 (1–2): 20–4. doi:10.1016/S0014-5793(99)00686-9. PMID 10403367.

[entrez-3] "Entrez Gene: RAB5B RAB5B, member RAS oncogene family".

[1]

[2]

[3]

@@ Line 1: / Line 1: @@
-<!-- The PBB_Controls template provides controls for Protein Box Bot, please see Template:PBB_Controls for details. -->
+{{Underlinked|date=June 2016}}
-{{PBB_Controls
+{{Infobox_gene}}
-| update_page = yes
+'''Ras-related protein Rab-5B''' is a [[protein]] that in humans is [[ENCODE|encoded]] by the ''RAB5B'' [[gene]].<ref name="pmid1541686">{{cite journal | vauthors = Wilson DB, Wilson MP | title = Identification and subcellular localization of human rab5b, a new member of the ras-related superfamily of GTPases | journal = J Clin Invest | volume = 89 | issue = 3 | pages = 996–1005 | date = Apr 1992 | pmid = 1541686 | pmc = 442949 | doi = 10.1172/JCI115683 }}</ref><ref name="pmid10403367">{{cite journal | vauthors = Chiariello M, Bruni CB, Bucci C | title = The small GTPases Rab5a, Rab5b and Rab5c are differentially phosphorylated in vitro | journal = FEBS Lett | volume = 453 | issue = 1-2 | pages = 20–4 | date = Aug 1999 | pmid = 10403367 | pmc =  | doi = 10.1016/S0014-5793(99)00686-9 }}</ref><ref name="entrez">{{cite web | title = Entrez Gene: RAB5B RAB5B, member RAS oncogene family| url = https://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=5869| accessdate = }}</ref>
-| require_manual_inspection = no
-| update_protein_box = yes
-| update_summary = yes
-| update_citations = yes
-}}
-<!-- The GNF_Protein_box is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
+== References ==
-{{GNF_Protein_box
+{{reflist}}
- | image = PBB_Protein_RAB5B_image.jpg
- | image_source = [[Protein_Data_Bank|PDB]] rendering based on 1huq.
- | PDB = {{PDB2|1huq}}, {{PDB2|1z07}}, {{PDB2|1z0d}}, {{PDB2|2hei}}
- | Name = RAB5B, member RAS oncogene family
- | HGNCid = 9784
- | Symbol = RAB5B
- | AltSymbols =;
- | OMIM = 179514
- | ECnumber =
- | Homologene = 88670
- | MGIid =
- | GeneAtlas_image1 = PBB_GE_RAB5B_201276_at_tn.png
- | Function = {{GNF_GO|id=GO:0000166 |text = nucleotide binding}} {{GNF_GO|id=GO:0003924 |text = GTPase activity}} {{GNF_GO|id=GO:0005525 |text = GTP binding}} {{GNF_GO|id=GO:0030742 |text = GTP-dependent protein binding}}
- | Component = {{GNF_GO|id=GO:0005622 |text = intracellular}} {{GNF_GO|id=GO:0005624 |text = membrane fraction}} {{GNF_GO|id=GO:0005768 |text = endosome}} {{GNF_GO|id=GO:0005886 |text = plasma membrane}}
- | Process = {{GNF_GO|id=GO:0007264 |text = small GTPase mediated signal transduction}} {{GNF_GO|id=GO:0015031 |text = protein transport}}
- | Orthologs = {{GNF_Ortholog_box
-    | Hs_EntrezGene = 5869
-    | Hs_Ensembl = ENSG00000111540
-    | Hs_RefseqProtein = NP_002859
-    | Hs_RefseqmRNA = NM_002868
-    | Hs_GenLoc_db =
-    | Hs_GenLoc_chr = 12
-    | Hs_GenLoc_start = 54654027
-    | Hs_GenLoc_end = 54674736
-    | Hs_Uniprot = P61020
-    | Mm_EntrezGene =
-    | Mm_Ensembl =
-    | Mm_RefseqmRNA =
-    | Mm_RefseqProtein =
-    | Mm_GenLoc_db =
-    | Mm_GenLoc_chr =
-    | Mm_GenLoc_start =
-    | Mm_GenLoc_end =
-    | Mm_Uniprot =
-  }}
-}}
-'''RAB5B, member RAS oncogene family''', also known as '''RAB5B''', is a human [[gene]].<ref name="entrez">{{cite web | title = Entrez Gene: RAB5B RAB5B, member RAS oncogene family| url = http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=5869| accessdate = }}</ref>
-<!-- The PBB_Summary template is automatically maintained by Protein Box Bot.  See Template:PBB_Controls to Stop updates. -->
+== Further reading ==
-{{PBB_Summary
-| section_title =
-| summary_text =
-}}
-==References==
-{{reflist|2}}
-==Further reading==
 {{refbegin | 2}}
-{{PBB_Further_reading
+*{{cite journal | vauthors = Bucci C, Lütcke A, Steele-Mortimer O, Olkkonen VM, Dupree P, Chiariello M, Bruni CB, Simons K, Zerial M | title = Co-operative regulation of endocytosis by three Rab5 isoforms. | journal = FEBS Lett. | volume = 366 | issue = 1 | pages = 65–71 | year = 1995 | pmid = 7789520 | doi = 10.1016/0014-5793(95)00477-Q }}
-| citations =
+*{{cite journal | vauthors = Korenberg JR, Chen XN, Adams MD, Venter JC | title = Toward a cDNA map of the human genome. | journal = Genomics | volume = 29 | issue = 2 | pages = 364–70 | year = 1996 | pmid = 8666383 | doi = 10.1006/geno.1995.9993 }}
-*{{cite journal  | author=Wilson DB, Wilson MP |title=Identification and subcellular localization of human rab5b, a new member of the ras-related superfamily of GTPases. |journal=J. Clin. Invest. |volume=89 |issue= 3 |pages= 996-1005 |year= 1992 |pmid= 1541686 |doi=  }}
+*{{cite journal | vauthors = Bao S, Zhu J, Garvey WT | title = Cloning of Rab GTPases expressed in human skeletal muscle: studies in insulin-resistant subjects. | journal = Horm. Metab. Res. | volume = 30 | issue = 11 | pages = 656–62 | year = 1999 | pmid = 9918381 | doi = 10.1055/s-2007-978953 }}
-*{{cite journal  | author=Bucci C, Lütcke A, Steele-Mortimer O, ''et al.'' |title=Co-operative regulation of endocytosis by three Rab5 isoforms. |journal=FEBS Lett. |volume=366 |issue= 1 |pages= 65-71 |year= 1995 |pmid= 7789520 |doi=  }}
+*{{cite journal | vauthors = Callaghan J, Nixon S, Bucci C, Toh BH, Stenmark H | title = Direct interaction of EEA1 with Rab5b. | journal = Eur. J. Biochem. | volume = 265 | issue = 1 | pages = 361–6 | year = 1999 | pmid = 10491193 | doi = 10.1046/j.1432-1327.1999.00743.x }}
-*{{cite journal  | author=Korenberg JR, Chen XN, Adams MD, Venter JC |title=Toward a cDNA map of the human genome. |journal=Genomics |volume=29 |issue= 2 |pages= 364-70 |year= 1996 |pmid= 8666383 |doi=  }}
+*{{cite journal | vauthors = Hartley JL, Temple GF, Brasch MA | title = DNA cloning using in vitro site-specific recombination. | journal = Genome Res. | volume = 10 | issue = 11 | pages = 1788–95 | year = 2001 | pmid = 11076863 | pmc = 310948 | doi = 10.1101/gr.143000 }}
-*{{cite journal  | author=Bao S, Zhu J, Garvey WT |title=Cloning of Rab GTPases expressed in human skeletal muscle: studies in insulin-resistant subjects. |journal=Horm. Metab. Res. |volume=30 |issue= 11 |pages= 656-62 |year= 1999 |pmid= 9918381 |doi=  }}
+*{{cite journal | vauthors = Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A | title = Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. | journal = Genome Res. | volume = 11 | issue = 3 | pages = 422–35 | year = 2001 | pmid = 11230166 | pmc = 311072 | doi = 10.1101/gr.GR1547R }}
-*{{cite journal  | author=Chiariello M, Bruni CB, Bucci C |title=The small GTPases Rab5a, Rab5b and Rab5c are differentially phosphorylated in vitro. |journal=FEBS Lett. |volume=453 |issue= 1-2 |pages= 20-4 |year= 1999 |pmid= 10403367 |doi=  }}
+*{{cite journal | vauthors = Simpson JC, Wellenreuther R, Poustka A, Pepperkok R, Wiemann S | title = Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. | journal = EMBO Rep. | volume = 1 | issue = 3 | pages = 287–92 | year = 2001 | pmid = 11256614 | pmc = 1083732 | doi = 10.1093/embo-reports/kvd058 }}
-*{{cite journal  | author=Callaghan J, Nixon S, Bucci C, ''et al.'' |title=Direct interaction of EEA1 with Rab5b. |journal=Eur. J. Biochem. |volume=265 |issue= 1 |pages= 361-6 |year= 1999 |pmid= 10491193 |doi=  }}
+*{{cite journal | vauthors = Tall GG, Barbieri MA, Stahl PD, Horazdovsky BF | title = Ras-activated endocytosis is mediated by the Rab5 guanine nucleotide exchange activity of RIN1. | journal = Dev. Cell | volume = 1 | issue = 1 | pages = 73–82 | year = 2001 | pmid = 11703925 | doi = 10.1016/S1534-5807(01)00008-9 }}
-*{{cite journal  | author=Hartley JL, Temple GF, Brasch MA |title=DNA cloning using in vitro site-specific recombination. |journal=Genome Res. |volume=10 |issue= 11 |pages= 1788-95 |year= 2001 |pmid= 11076863 |doi=  }}
+*{{cite journal | vauthors = Saito K, Murai J, Kajiho H, Kontani K, Kurosu H, Katada T | title = A novel binding protein composed of homophilic tetramer exhibits unique properties for the small GTPase Rab5. | journal = J. Biol. Chem. | volume = 277 | issue = 5 | pages = 3412–8 | year = 2002 | pmid = 11733506 | doi = 10.1074/jbc.M106276200 }}
-*{{cite journal  | author=Wiemann S, Weil B, Wellenreuther R, ''et al.'' |title=Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. |journal=Genome Res. |volume=11 |issue= 3 |pages= 422-35 |year= 2001 |pmid= 11230166 |doi= 10.1101/gr.154701 }}
+*{{cite journal | vauthors = Merithew E, Stone C, Eathiraj S, Lambright DG | title = Determinants of Rab5 interaction with the N terminus of early endosome antigen 1. | journal = J. Biol. Chem. | volume = 278 | issue = 10 | pages = 8494–500 | year = 2003 | pmid = 12493736 | doi = 10.1074/jbc.M211514200 }}
-*{{cite journal  | author=Simpson JC, Wellenreuther R, Poustka A, ''et al.'' |title=Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. |journal=EMBO Rep. |volume=1 |issue= 3 |pages= 287-92 |year= 2001 |pmid= 11256614 |doi= 10.1093/embo-reports/kvd058 }}
+*{{cite journal | vauthors = Kajiho H, Saito K, Tsujita K, Kontani K, Araki Y, Kurosu H, Katada T | title = RIN3: a novel Rab5 GEF interacting with amphiphysin II involved in the early endocytic pathway. | journal = J. Cell Sci. | volume = 116 | issue = Pt 20 | pages = 4159–68 | year = 2004 | pmid = 12972505 | doi = 10.1242/jcs.00718 }}
-*{{cite journal  | author=Tall GG, Barbieri MA, Stahl PD, Horazdovsky BF |title=Ras-activated endocytosis is mediated by the Rab5 guanine nucleotide exchange activity of RIN1. |journal=Dev. Cell |volume=1 |issue= 1 |pages= 73-82 |year= 2001 |pmid= 11703925 |doi=  }}
+*{{cite journal | vauthors = Wiemann S, Arlt D, Huber W, Wellenreuther R, Schleeger S, Mehrle A, Bechtel S, Sauermann M, Korf U, Pepperkok R, Sültmann H, Poustka A | title = From ORFeome to biology: a functional genomics pipeline. | journal = Genome Res. | volume = 14 | issue = 10B | pages = 2136–44 | year = 2004 | pmid = 15489336 | pmc = 528930 | doi = 10.1101/gr.2576704 }}
-*{{cite journal  | author=Saito K, Murai J, Kajiho H, ''et al.'' |title=A novel binding protein composed of homophilic tetramer exhibits unique properties for the small GTPase Rab5. |journal=J. Biol. Chem. |volume=277 |issue= 5 |pages= 3412-8 |year= 2002 |pmid= 11733506 |doi= 10.1074/jbc.M106276200 }}
+*{{cite journal | vauthors = Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S | title = The LIFEdb database in 2006. | journal = Nucleic Acids Res. | volume = 34 | issue = Database issue | pages = D415–8 | year = 2006 | pmid = 16381901 | pmc = 1347501 | doi = 10.1093/nar/gkj139 }}
-*{{cite journal  | author=Strausberg RL, Feingold EA, Grouse LH, ''et al.'' |title=Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |journal=Proc. Natl. Acad. Sci. U.S.A. |volume=99 |issue= 26 |pages= 16899-903 |year= 2003 |pmid= 12477932 |doi= 10.1073/pnas.242603899 }}
+*{{cite journal | vauthors = Chi A, Valencia JC, Hu ZZ, Watabe H, Yamaguchi H, Mangini NJ, Huang H, Canfield VA, Cheng KC, Yang F, Abe R, Yamagishi S, Shabanowitz J, Hearing VJ, Wu C, Appella E, Hunt DF | title = Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. | journal = J. Proteome Res. | volume = 5 | issue = 11 | pages = 3135–44 | year = 2007 | pmid = 17081065 | doi = 10.1021/pr060363j }}
-*{{cite journal  | author=Merithew E, Stone C, Eathiraj S, Lambright DG |title=Determinants of Rab5 interaction with the N terminus of early endosome antigen 1. |journal=J. Biol. Chem. |volume=278 |issue= 10 |pages= 8494-500 |year= 2003 |pmid= 12493736 |doi= 10.1074/jbc.M211514200 }}
+*{{cite journal | vauthors = Hirota Y, Kuronita T, Fujita H, Tanaka Y | title = A role for Rab5 activity in the biogenesis of endosomal and lysosomal compartments. | journal = Biochem. Biophys. Res. Commun. | volume = 364 | issue = 1 | pages = 40–7 | year = 2007 | pmid = 17927960 | doi = 10.1016/j.bbrc.2007.09.089 }}
-*{{cite journal  | author=Kajiho H, Saito K, Tsujita K, ''et al.'' |title=RIN3: a novel Rab5 GEF interacting with amphiphysin II involved in the early endocytic pathway. |journal=J. Cell. Sci. |volume=116 |issue= Pt 20 |pages= 4159-68 |year= 2004 |pmid= 12972505 |doi= 10.1242/jcs.00718 }}
-*{{cite journal  | author=Gerhard DS, Wagner L, Feingold EA, ''et al.'' |title=The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |journal=Genome Res. |volume=14 |issue= 10B |pages= 2121-7 |year= 2004 |pmid= 15489334 |doi= 10.1101/gr.2596504 }}
-*{{cite journal  | author=Wiemann S, Arlt D, Huber W, ''et al.'' |title=From ORFeome to biology: a functional genomics pipeline. |journal=Genome Res. |volume=14 |issue= 10B |pages= 2136-44 |year= 2004 |pmid= 15489336 |doi= 10.1101/gr.2576704 }}
-*{{cite journal  | author=Mehrle A, Rosenfelder H, Schupp I, ''et al.'' |title=The LIFEdb database in 2006. |journal=Nucleic Acids Res. |volume=34 |issue= Database issue |pages= D415-8 |year= 2006 |pmid= 16381901 |doi= 10.1093/nar/gkj139 }}
-*{{cite journal  | author=Chi A, Valencia JC, Hu ZZ, ''et al.'' |title=Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes. |journal=J. Proteome Res. |volume=5 |issue= 11 |pages= 3135-44 |year= 2007 |pmid= 17081065 |doi= 10.1021/pr060363j }}
-*{{cite journal  | author=Hirota Y, Kuronita T, Fujita H, Tanaka Y |title=A role for Rab5 activity in the biogenesis of endosomal and lysosomal compartments. |journal=Biochem. Biophys. Res. Commun. |volume=364 |issue= 1 |pages= 40-7 |year= 2007 |pmid= 17927960 |doi= 10.1016/j.bbrc.2007.09.089 }}
-}}
 {{refend}}
+{{PDB Gallery|geneid=5869}}
-{{protein-stub}}
+{{gene-12-stub}}
-{{WikiDoc Sources}}

RAB5B: Difference between revisions

Revision as of 20:42, 8 November 2017

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