Chitinase

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File:Chitinase-1CNS.png
Chitinase from barley seeds
Chitinase
Identifiers
EC number3.2.1.14
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
chitinase, acidic
Identifiers
SymbolCHIA
Entrez27159
HUGO17432
OMIM606080
RefSeqNM_001040623
UniProtQ9BZP6
Other data
LocusChr. 1 p13.1-21.3
chitinase 1 (chitotriosidase)
Identifiers
SymbolCHIT1
Entrez1118
HUGO1936
OMIM600031
RefSeqNM_003465
UniProtQ13231
Other data
LocusChr. 1 q31-q32

Chitinases (chitodextrinase, 1,4-beta-poly-N-acetylglucosaminidase, poly-beta-glucosaminidase, beta-1,4-poly-N-acetyl glucosamidinase, poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase, (1->4)-2-acetamido-2-deoxy-beta-D-glucan glycanohydrolase) are hydrolytic enzymes that break down glycosidic bonds in chitin.[1]

As chitin is a component of the cell walls of fungi and exoskeletal elements of some animals (including worms and arthropods), chitinases are generally found in organisms that either need to reshape their own chitin[2] or dissolve and digest the chitin of fungi or animals.

Species distribution

Chitinivorous organisms include many bacteria[3] (Aeromonads, Bacillus, Vibrio,[4] among others), which may be pathogenic or detritivorous. They attack living arthropods, zooplankton or fungi or they may degrade the remains of these organisms.

Fungi, such as Coccidioides immitis, also possess degradative chitinases related to their role as detritivores and also to their potential as arthropod pathogens.

Chitinases are also present in plants (barley seed chitinase: PDB: 1CNS​, EC 3.2.1.14); some of these are pathogenesis related (PR) proteins that are induced as part of systemic acquired resistance. Expression is mediated by the NPR1 gene and the salicylic acid pathway, both involved in resistance to fungal and insect attack. Other plant chitinases may be required for creating fungal symbioses.[5]

Although mammals do not produce chitin, they have two functional chitinases, Chitotriosidase (CHIT1) and acidic mammalian chitinase (AMCase), as well as chitinase-like proteins (such as YKL-40) that have high sequence similarity but lack chitinase activity.[6]

Classification

  1. Endochitinases (EC 3.2.1.14) randomly split chitin at internal sites of the chitin microfibril, forming soluble, low molecular mass multimer products. The multimer products includes di-acetylchitobiose, chitotriose, and chitotetraose, with the dimer being the predominant product.[7]
    File:Endochitinase.png
    Endochitinase breaking down chitin into multimer products.
  2. Exochitinases have also been divided into two sub categories:
    1. Chitobiosidases (EC 3.2.1.29) act on the non-reducing end of the chitin microfibril, releasing the dimer, di-acetylchitobiose, one by one from the chitin chain. Therefore, there is no release of monosaccharides or oligosaccharides in this reaction.[8]
    2. β-1,4- N-acetylglucosaminidases (EC 3.2.1.30) split the multimer products, such as di-acetylchitobiose, chitotriose, and chitotetraose, into monomers of N-acetylglucoseamine (GlcNAc).[7]
File:Exochitinase.png
Exochitinase breaking down chitin into dimers via chitobiosidase and monomers via β-1,4 N-acetylglucosaminidase.

Chitinases were also classified based on the amino acid sequences, as that would be more helpful in understanding the evolutionary relationships of these enzymes to each other.[9] Therefore, the chitinases were grouped into three families: 18, 19, and 20.[10] Both families 18 and 19 consists of endochitinases from a variety of different organisms, including viruses, bacteria, fungi, insect, and plants. However, family 19 mainly comprises plant chitinases. Family 20 includes N-acetylglucosaminidase and a similar enzyme, N-acetylhexosaminidase.[9]

And as the gene sequences of the chitinases were known, they were further classified into six classes based on their sequences. Characteristics that determined the classes of chitinases were the N-terminal sequence, localization of the enzyme, isoelectric pH, signal peptide, and inducers.[9]

Class I chitinases had a cysteine-rich N-terminal, leucine- or valine-rich signal peptide, and vacuolar localization. And then, Class I chitinases were further subdivided based on their acidic or basic nature into Class Ia and Class Ib, respectively.[11] Class 1 chitinases were found to comprise only plant chitinases and mostly endochitinases.

Class II chitinases did not have the cysteine-rich N-terminal but had a similar sequence to Class I chitinases. Class II chitinases were found in plants, fungi, and bacteria and mostly consisted of exochitinases.[9]

Class III chitinases did not have similar sequences to chitinases in Class I or Class II.[9]

Class IV chitinases had similar characteristics, including the immunological properties, as Class I chitinases.[9] However, Class IV chitinases were significantly smaller in size compared to Class I chitinases.[12]

Class V and Class VI chitinases are not well characterized. However, one example of a Class V chitinase showed two chitin binding domains in tandem, and based on the gene sequence, the cysteine-rich N-terminal seemed to have been lost during evolution, probably due to less selection pressure that caused the catalytic domain to lose its function.[9]

Function

Like cellulose, chitin is an abundant biopolymer that is relatively resistant to degradation.[13] It is typically not digested by animals, though certain fish are able to digest chitin.[14] It is currently assumed that chitin digestion by animals requires bacterial symbionts and lengthy fermentations, similar to cellulase digestion by ruminants. Nevertheless, chitinases have been isolated from the stomachs of certain mammals, including humans.[15]

Chitinase activity can also be detected in human blood[16][17][17] and possibly cartilage.[18] As in plant chitinases this may be related to pathogen resistance.[19][20]

Clinical significance

Chitinases produced in the human body (known as "human chitinases") may be related in response to allergies, and asthma has been linked to enhanced chitinase expression levels.[21][22][23][24][25]

Human chitinases may explain the link between some of the most common allergies (dust mites, mold spores—both of which contain chitin) and worm (helminth) infections, as part of one version of the hygiene hypothesis[26][27][28] (worms have chitinous mouthparts to hold the intestinal wall). Finally, the link between chitinases and salicylic acid in plants is well established[further explanation needed]—but there is a hypothetical link between salicylic acid and allergies in humans.[29]

Regulation in fungi

Regulation varies from species to species, and within an organism, chitinases with different physiological functions would be under different regulation mechanisms. For example, chitinases that are involved in maintenance, such as remodeling the cell wall, are constitutively expressed. However, chitinases that are involved in maintenance, such as remodeling the cell wall, are constitutively expressed. However, chitinases that have specialized functions, such as degrading exogenous chitin or participating in cell division, need spatio-temporal regulation of the chitinase activity.[30]

The regulation of an endochitinase in Trichoderma atroviride is dependent on a N-acetylglucosaminidase, and the data indicates a feedback-loop where the break down of chitin produces N-acetylglucosamine, which would be possibly taken up and triggers up-regulation of the chitinbiosidases.[31]

In Saccharomyces cerevisiae and the regulation of ScCts1p (S. cerevisiae chitinase 1), one of the chitinases involved in cell separation after cytokinesis by degrading the chitin of the primary septum.[32] As these types of chitinases are important in cell division, there must be tight regulation and activation. Specifically, Cts1 expression has to be activated in daughter cells during late mitosis and the protein has to localize at the daughter site of the septum.[33] And to do this, there must be coordination with other networks controlling the different phases of the cell, such as Cdc14 Early Anaphase Release (FEAR), mitotic exit network (MEN), and regulation of Ace2p (transcription factor) and cellular morphogenesis (RAM)[34] signalling networks. Overall, the integration of the different regulatory networks allows for the cell wall degrading chitinase to function dependent on the cell's stage in the cell cycle and at specific locations among the daughter cells.[30]

Presence in food

Chitinases occur naturally in many common foods. Bananas, chestnuts, kiwis, avocados, papaya, and tomatoes, for example, all contain significant levels of chitinase, as defense against fungal and invertebrate attack. Stress, or environmental signals like ethylene gas, may stimulate increased production of chitinase.

Some parts of chitinase molecules, almost identical in structure to hevein or other proteins in rubber latex due to their similar function in plant defense, may trigger an allergic cross-reaction known as latex-fruit syndrome.[35]

Applications

Chitinases have a wealth of applications, some of which have already been realized by industry. This includes bio-conversion of chitin to useful products such as fertilizer, the production of non-allergenic, non-toxic, biocompatible, and biodegradable materials (contact lenses, artificial skin and sutures with these qualities are already being produced) and enhancement of insecticides and fungicides.[36]

Possible future applications of chitinases are as food additives to increase shelf life, therapeutic agent for asthma and chronic rhinosinusitis, as an anti-fungal remedy, an anti-tumor drug and as a general ingredient to be used in protein engineering.[36]

See also

References

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  3. Xiao X, Yin X, Lin J, Sun L, You Z, Wang P, Wang F (December 2005). "Chitinase genes in lake sediments of Ardley Island, Antarctica". Applied and Environmental Microbiology. 71 (12): 7904–9. doi:10.1128/AEM.71.12.7904-7909.2005. PMC 1317360. PMID 16332766.
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  15. Paoletti MG, Norberto L, Damini R, Musumeci S (2007). "Human gastric juice contains chitinase that can degrade chitin". Annals of Nutrition & Metabolism. 51 (3): 244–51. doi:10.1159/000104144. PMID 17587796.
  16. Renkema GH, Boot RG, Muijsers AO, Donker-Koopman WE, Aerts JM (February 1995). "Purification and characterization of human chitotriosidase, a novel member of the chitinase family of proteins". The Journal of Biological Chemistry. 270 (5): 2198–202. doi:10.1074/jbc.270.5.2198. PMID 7836450.
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  19. Recklies AD, White C, Ling H (July 2002). "The chitinase 3-like protein human cartilage glycoprotein 39 (HC-gp39) stimulates proliferation of human connective-tissue cells and activates both extracellular signal-regulated kinase- and protein kinase B-mediated signalling pathways". The Biochemical Journal. 365 (Pt 1): 119–26. doi:10.1042/BJ20020075. PMC 1222662. PMID 12071845.
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  29. Feingold BF (March 1975). "Food additives in clinical medicine". International Journal of Dermatology. 14 (2): 112–4. doi:10.1111/j.1365-4362.1975.tb01426.x. PMID 1123257.
  30. 30.0 30.1 Langner T, Göhre V (May 2016). "Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions". Current Genetics. 62 (2): 243–54. doi:10.1007/s00294-015-0530-x. PMID 26527115.
  31. Brunner K, Peterbauer CK, Mach RL, Lorito M, Zeilinger S, Kubicek CP (July 2003). "The Nag1 N-acetylglucosaminidase of Trichoderma atroviride is essential for chitinase induction by chitin and of major relevance to biocontrol". Current Genetics. 43 (4): 289–95. doi:10.1007/s00294-003-0399-y. PMID 12748812.
  32. Kuranda MJ, Robbins PW (October 1991). "Chitinase is required for cell separation during growth of Saccharomyces cerevisiae". The Journal of Biological Chemistry. 266 (29): 19758–67. PMID 1918080.
  33. Colman-Lerner A, Chin TE, Brent R (December 2001). "Yeast Cbk1 and Mob2 activate daughter-specific genetic programs to induce asymmetric cell fates". Cell. 107 (6): 739–50. PMID 11747810.
  34. Nelson B, Kurischko C, Horecka J, Mody M, Nair P, Pratt L, Zougman A, McBroom LD, Hughes TR, Boone C, Luca FC (September 2003). "RAM: a conserved signaling network that regulates Ace2p transcriptional activity and polarized morphogenesis". Molecular Biology of the Cell. 14 (9): 3782–803. doi:10.1091/mbc.E03-01-0018. PMC 196567. PMID 12972564.
  35. "Latex-Fruit Syndrome and Class 2 Food Allergy". Division of Medical Devices, Japan.
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