- For other uses, see repression
Repressor proteins are coded for by regulator genes. Repressor proteins then attach to a DNA segment known as the operator. By binding to the operator, the repressor protein prevents the RNA polymerase from creating messenger RNA.
If an inducer, a molecule that initiates the gene expression, is present, then it can interact with the repressor protein and detach it from the operator. RNA polymerase then can transcribe the message (expressing the gene).
The above mechanism of repression is a type of a feedback mechanism because it only allows transcription to occur if a certain condition is present: the presence of specific inducer(s).
An example of a repressor protein is the methionine repressor MetJ. MetJ is a homodimer consisting of two monomers which each provide a beta ribbon and an alpha helix. Together, the beta ribbons of each monomer come together to form an antiparallel beta-sheet which binds to the DNA operator ("Met box") in its major groove. Once bound the MetJ dimer interacts with another MetJ dimer bound to the complementary strand of the operator via its alpha helices.
The Met box has the sequence AGACGTCT which is a palindrome (it shows dyad symmetry) allowing the same sequence to be recognised on either strand of the DNA. The junction between c and g in the middle of the Met box contains a pyramidine-purine step that becomes over-twisted forming a kink in the phosphodiester backbone. This is how the protein checks for the recognition site as it allows the DNA duplex to follow the shape of the protein.
Each MetJ dimer contains two binding sites for the cofactor S-Adenosyl methionine (SAM) which is a product in the biosynthesis of methionine. When SAM is present it binds to the MetJ protein increasing its affinity for its cognate operator site which halts transcription of genes involved in methionine synthesis. When SAM concentration becomes low the repressor dissociates from the operator site allowing more methionine to be produced.
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