Pseudomonas sRNA P9

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Pseudomonas sRNA P9
Template:Abbreviation
Type: Gene;
2° structure: INFERNAL
Seed alignment: Predicted; RNAalifold;
Avg length: 124.4 nucleotides
Avg identity: 66%

Pseudomonas sRNA P9 is a ncRNA that was predicted using bioinformatic tools in the genome of the opportunistic pathogen Pseudomonas aeruginosa and its expression verified by northern blot analysis [1]. P9 appears to be conserved in several Pseudomonas species in addition to Bordetella species. In both Pseudomonas and Bordetella species P9 appears to be located upstream of a predicted threonine dehydratase gene. P9 has a predicted Rho independent terminator at the 3' end but the function of P9 is unknown [1]

References

  1. 1.0 1.1 Livny J, Brencic A, Lory S, Waldor MK (2006). "Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2". Nucleic Acids Res. 34 (12): 3484–93. doi:10.1093/nar/gkl453. PMID 16870723.

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